HL_8CKU_029
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8CKU|1|AA|U|1353, 8CKU|1|AA|G|1354, 8CKU|1|AA|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_029 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2843
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8CKU|1|AA|U|1347
8CKU|1|AA|U|1348
8CKU|1|AA|G|1349
8CKU|1|AA|A|1350
8CKU|1|AA|U|1351
8CKU|1|AA|A|1352
8CKU|1|AA|U|1353
8CKU|1|AA|G|1354
8CKU|1|AA|A|1355
8CKU|1|AA|U|1356
8CKU|1|AA|G|1357
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain II
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L32
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