Loop HL_8CKU

3D structure

PDB id: 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.11 Å

Loop

Sequence: GUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUAC
Length: 44 nucleotides
Bulged bases: 8CKU|1|AA|U|2464, 8CKU|1|AA|C|2470, 8CKU|1|AA|A|2484
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CKU|1|AA|G|2452
8CKU|1|AA|U|2453
8CKU|1|AA|G|2454
8CKU|1|AA|U|2455
8CKU|1|AA|A|2456
8CKU|1|AA|G|2457
8CKU|1|AA|A|2458
8CKU|1|AA|A|2459
8CKU|1|AA|U|2460
8CKU|1|AA|A|2461
8CKU|1|AA|A|2462
8CKU|1|AA|G|2463
8CKU|1|AA|U|2464
8CKU|1|AA|G|2465
8CKU|1|AA|G|2466
8CKU|1|AA|G|2467
8CKU|1|AA|A|2468
8CKU|1|AA|G|2469
8CKU|1|AA|C|2470
8CKU|1|AA|U|2471
8CKU|1|AA|U|2472
8CKU|1|AA|C|2473
8CKU|1|AA|G|2474
8CKU|1|AA|G|2475
8CKU|1|AA|C|2476
8CKU|1|AA|G|2477
8CKU|1|AA|C|2478
8CKU|1|AA|C|2479
8CKU|1|AA|A|2480
8CKU|1|AA|G|2481
8CKU|1|AA|U|2482
8CKU|1|AA|G|2483
8CKU|1|AA|A|2484
8CKU|1|AA|A|2485
8CKU|1|AA|A|2486
8CKU|1|AA|U|2487
8CKU|1|AA|A|2488
8CKU|1|AA|C|2489
8CKU|1|AA|C|2490
8CKU|1|AA|A|2491
8CKU|1|AA|C|2492
8CKU|1|AA|U|2493
8CKU|1|AA|A|2494
8CKU|1|AA|C|2495

Current chains

Chain AA: 25S ribosomal RNA

Nearby chains

Chain 1: 40S ribosomal protein S25-A
Chain Cc: Transfer RNA; tRNA
Chain i: 40S ribosomal protein S5

HL_8CKU_052