HL_8CKU_053

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_053 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.227

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8CKU|1|AA|G|2534
8CKU|1|AA|A|2535
8CKU|1|AA|A|2536
8CKU|1|AA|U|2543
8CKU|1|AA|U|2544
8CKU|1|AA|C|2545

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain KK

60S ribosomal protein L8-A

Chain e

40S ribosomal protein S1-A