HL_8CKU_054

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8CKU|1|AA|U|2571, 8CKU|1|AA|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_054 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2414

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8CKU|1|AA|C|2568
8CKU|1|AA|A|2569
8CKU|1|AA|U|2570
8CKU|1|AA|U|2571
8CKU|1|AA|C|2572
8CKU|1|AA|G|2573

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A