HL_8CKU_059
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- U(OMU)UCAG(OMU)GUGA
- Length
- 11 nucleotides
- Bulged bases
- 8CKU|1|AA|A|2727
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_059 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3371
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|AA|U|2723
8CKU|1|AA|OMU|2724
8CKU|1|AA|U|2725
8CKU|1|AA|C|2726
8CKU|1|AA|A|2727
8CKU|1|AA|G|2728
8CKU|1|AA|OMU|2729
8CKU|1|AA|G|2730
8CKU|1|AA|U|2731
8CKU|1|AA|G|2732
8CKU|1|AA|A|2733
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain M
- 60S ribosomal protein L28
- Chain N
- 60S ribosomal protein L29
- Chain a
- 60S ribosomal protein L42-A
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