HL_8CKU_071

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8CKU|1|AA|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1283

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8CKU|1|AA|G|3303
8CKU|1|AA|U|3304
8CKU|1|AA|A|3305
8CKU|1|AA|U|3306
8CKU|1|AA|A|3307
8CKU|1|AA|C|3308
8CKU|1|AA|G|3309
8CKU|1|AA|A|3310
8CKU|1|AA|C|3311

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3