HL_8CKU_120
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- (OMU)UCAG(OMU)GUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_120 not in the Motif Atlas
- Homologous match to HL_8P9A_169
- Geometric discrepancy: 0.1216
- The information below is about HL_8P9A_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15296.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|AA|OMU|2724
8CKU|1|AA|U|2725
8CKU|1|AA|C|2726
8CKU|1|AA|A|2727
8CKU|1|AA|G|2728
8CKU|1|AA|OMU|2729
8CKU|1|AA|G|2730
8CKU|1|AA|U|2731
8CKU|1|AA|G|2732
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain F
- 60S ribosomal protein L21-A
- Chain M
- 60S ribosomal protein L28
- Chain a
- 60S ribosomal protein L42-A
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