HL_8CKU_123

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

8CKU|1|c|U|277, 8CKU|1|c|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_123 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3534

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8CKU|1|c|C|275
8CKU|1|c|C|276
8CKU|1|c|U|277
8CKU|1|c|U|278
8CKU|1|c|G|279
8CKU|1|c|U|280
8CKU|1|c|G|281

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A