HL_8CKU_124

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

U(OMC)CAAGG(A2M)

Length

8 nucleotides

Bulged bases

8CKU|1|c|A|416, 8CKU|1|c|A|417

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|U|413
8CKU|1|c|OMC|414
8CKU|1|c|C|415
8CKU|1|c|A|416
8CKU|1|c|A|417
8CKU|1|c|G|418
8CKU|1|c|G|419
8CKU|1|c|A2M|420

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A