HL_8CMJ_005

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8CMJ|1|AA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1392

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8CMJ|1|AA|U|194
8CMJ|1|AA|U|195
8CMJ|1|AA|G|196
8CMJ|1|AA|G|197
8CMJ|1|AA|A|198
8CMJ|1|AA|A|199
8CMJ|1|AA|C|200
8CMJ|1|AA|A|201

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A