8CMJ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CMJ_001 | 1/AA/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_8CMJ_002 | 1/AA/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8CMJ_003 | 1/AA/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8CMJ_004 | 1/AA/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_8CMJ_005 | 1/AA/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8CMJ_006 | 1/AA/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8CMJ_007 | 1/AA/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8CMJ_008 | 1/AA/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8CMJ_009 | 1/AA/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8CMJ_010 | 1/AA/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8CMJ_011 | 1/AA/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8CMJ_111 | 1/AA/543:548 | No text annotation | homologous HL_8P9A_231 HL_13189.1 | |
| HL_8CMJ_012 | 1/AA/544:547 | No text annotation | ||
| HL_8CMJ_013 | 1/AA/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_8CMJ_122 | 1/AA/640:649 | No text annotation | homologous HL_8CRE_013 HL_28252.9 | |
| HL_8CMJ_015 | 1/AA/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8CMJ_016 | 1/AA/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8CMJ_017 | 1/AA/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_8CMJ_018 | 1/AA/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_8CMJ_019 | 1/AA/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8CMJ_112 | 1/AA/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8CMJ_021 | 1/AA/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8CMJ_022 | 1/AA/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8CMJ_023 | 1/AA/1023:1029 | No text annotation | geometric HL_5J7L_025 HL_87954.2 | |
| HL_8CMJ_024 | 1/AA/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_8CMJ_025 | 1/AA/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8CMJ_026 | 1/AA/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8CMJ_027 | 1/AA/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_8CMJ_028 | 1/AA/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_8CMJ_029 | 1/AA/1347:1357 | No text annotation | homologous HL_8P9A_141 HL_29762.1 | |
| HL_8CMJ_030 | 1/AA/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8CMJ_031 | 1/AA/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8CMJ_032 | 1/AA/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8CMJ_033 | 1/AA/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8CMJ_034 | 1/AA/1563:1577 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8CMJ_035 | 1/AA/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8CMJ_036 | 1/AA/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8CMJ_037 | 1/AA/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8CMJ_038 | 1/AA/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_8CMJ_039 | 1/AA/1760:1765 | GNRA related | homologous HL_5TBW_039 NA | |
| HL_8CMJ_040 | 1/AA/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8CMJ_041 | 1/AA/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8CMJ_042 | 1/AA/1862:1868 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8CMJ_043 | 1/AA/1923:1928 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_8CMJ_045 | 1/AA/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8CMJ_046 | 1/AA/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8CMJ_047 | 1/AA/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8CMJ_113 | 1/AA/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8CMJ_049 | 1/AA/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8CMJ_050 | 1/AA/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8CMJ_051 | 1/AA/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8CMJ_052 | 1/AA/2469:2476 | No text annotation | homologous HL_8C3A_052 NA | |
| HL_8CMJ_053 | 1/AA/2533:2546 | No text annotation | ||
| HL_8CMJ_054 | 1/AA/2568:2573 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_8CMJ_055 | 1/AA/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8CMJ_056 | 1/AA/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_8CMJ_057 | 1/AA/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_8CMJ_058 | 1/AA/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8CMJ_114 | 1/AA/2724:2732 | No text annotation | homologous HL_8P9A_169 HL_80599.2 | |
| HL_8CMJ_060 | 1/AA/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8CMJ_061 | 1/AA/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8CMJ_062 | 1/AA/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8CMJ_063 | 1/AA/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8CMJ_064 | 1/AA/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8CMJ_065 | 1/AA/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8CMJ_066 | 1/AA/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8CMJ_067 | 1/AA/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8CMJ_068 | 1/AA/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8CMJ_069 | 1/AA/3194:3197 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_8CMJ_070 | 1/AA/3240:3247 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8CMJ_071 | 1/AA/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_8CMJ_115 | 1/BB/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8CMJ_073 | 1/BB/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_8CMJ_074 | 1/BB/88:93 | GNRA | homologous HL_7A0S_070 HL_37824.8 | |
| HL_8CMJ_116 | 1/CC/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_8CMJ_075 | 1/CC/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_8CMJ_076 | 1/CC/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8CMJ_077 | 1/CC/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_8CMJ_078 | 1/c/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8CMJ_117 | 1/c/149:165 | No text annotation | ||
| HL_8CMJ_080 | 1/c/154:160 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8CMJ_082 | 1/c/243:250 | No text annotation | geometric HL_2Y9H_004 HL_14333.1 | |
| HL_8CMJ_083 | 1/c/275:281 | No text annotation | ||
| HL_8CMJ_084 | 1/c/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8CMJ_085 | 1/c/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8CMJ_086 | 1/c/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8CMJ_118 | 1/c/414:419 | UNCG | homologous HL_8P9A_200 HL_34617.5 | |
| HL_8CMJ_088 | 1/c/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8CMJ_089 | 1/c/518:533 | No text annotation | ||
| HL_8CMJ_090 | 1/c/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8CMJ_091 | 1/c/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8CMJ_092 | 1/c/777:783 | No text annotation | geometric HL_6VMY_004 HL_53890.2 | |
| HL_8CMJ_094 | 1/c/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8CMJ_095 | 1/c/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_8CMJ_123 | 1/c/997:1007 | No text annotation | homologous HL_8P9A_211 HL_75293.5 | |
| HL_8CMJ_120 | 1/c/1055:1064 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_8CMJ_098 | 1/c/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_8CMJ_121 | 1/c/1121:1126 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8CMJ_100 | 1/c/1188:1197 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
| HL_8CMJ_101 | 1/c/1238:1247 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8CMJ_102 | 1/c/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_8CMJ_103 | 1/c/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8CMJ_104 | 1/c/1359:1364 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_8CMJ_105 | 1/c/1396:1402 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8CMJ_124 | 1/c/1501:1506 | No text annotation | homologous HL_8CRE_222 HL_37824.8 | |
| HL_8CMJ_107 | 1/c/1549:1562 | No text annotation | ||
| HL_8CMJ_108 | 1/c/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8CMJ_110 | 1/c/1778:1783 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CMJ_014 | No text annotation | ||
| HL_8CMJ_020 | No text annotation | ||
| HL_8CMJ_044 | No text annotation | ||
| HL_8CMJ_048 | No text annotation | ||
| HL_8CMJ_059 | No text annotation | ||
| HL_8CMJ_072 | No text annotation | ||
| HL_8CMJ_079 | No text annotation | ||
| HL_8CMJ_081 | No text annotation | ||
| HL_8CMJ_087 | No text annotation | ||
| HL_8CMJ_093 | No text annotation | ||
| HL_8CMJ_119 | No text annotation | ||
| HL_8CMJ_096 | No text annotation | ||
| HL_8CMJ_097 | No text annotation | ||
| HL_8CMJ_099 | GNRA with extra cWW | ||
| HL_8CMJ_106 | No text annotation | ||
| HL_8CMJ_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CMJ_002 | 1/AA/7:8, 1/CC/150:152 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_8CMJ_003 | 1/AA/13:15, 1/CC/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8CMJ_004 | 1/AA/27:28, 1/AA/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8CMJ_254 | 1/AA/32:38, 1/AA/45:52 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_8CMJ_006 | 1/AA/82:89, 1/AA/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8CMJ_007 | 1/AA/123:124, 1/AA/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8CMJ_008 | 1/AA/125:127, 1/AA/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8CMJ_010 | 1/AA/163:165, 1/AA/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_8CMJ_291 | 1/AA/169:171, 1/AA/248:253 | No text annotation | ||
| IL_8CMJ_292 | 1/AA/172:173, 1/AA/245:247 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_8CMJ_255 | 1/AA/177:178, 1/AA/238:241 | Major groove platform | geometric IL_8DP3_001 IL_02555.1 | |
| IL_8CMJ_014 | 1/AA/189:191, 1/AA/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8CMJ_015 | 1/AA/337:339, 1/CC/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8CMJ_016 | 1/AA/376:379, 1/AA/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_8CMJ_017 | 1/AA/404:410, 1/CC/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8CMJ_018 | 1/AA/429:431, 1/AA/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_8CMJ_020 | 1/AA/512:513, 1/AA/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_8CMJ_021 | 1/AA/517:525, 1/AA/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_8CMJ_022 | 1/AA/531:538, 1/AA/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_8CMJ_023 | 1/AA/668:670, 1/AA/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8CMJ_024 | 1/AA/680:684, 1/AA/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_8CMJ_025 | 1/AA/725:728, 1/AA/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8CMJ_026 | 1/AA/752:753, 1/AA/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8CMJ_027 | 1/AA/755:756, 1/AA/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_8CMJ_028 | 1/AA/758:763, 1/AA/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8CMJ_256 | 1/AA/803:805, 1/AA/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8CMJ_257 | 1/AA/805:809, 1/AA/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8CMJ_031 | 1/AA/828:829, 1/AA/895:897 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
| IL_8CMJ_032 | 1/AA/833:834, 1/AA/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8CMJ_033 | 1/AA/834:838, 1/AA/855:859 | Triple sheared | geometric IL_5TBW_030 NA | |
| IL_8CMJ_034 | 1/AA/869:872, 1/AA/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8CMJ_035 | 1/AA/873:875, 1/AA/886:887 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_8CMJ_036 | 1/AA/907:909, 1/AA/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_8CMJ_037 | 1/AA/954:956, 1/AA/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8CMJ_038 | 1/AA/969:970, 1/AA/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8CMJ_039 | 1/AA/977:982, 1/AA/1101:1104 | No text annotation | ||
| IL_8CMJ_040 | 1/AA/983:985, 1/AA/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8CMJ_041 | 1/AA/991:997, 1/AA/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_8CMJ_042 | 1/AA/997:998, 1/AA/1050:1052 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_8CMJ_043 | 1/AA/999:1004, 1/AA/1046:1049 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_8CMJ_044 | 1/AA/1006:1009, 1/AA/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_8CMJ_045 | 1/AA/1009:1011, 1/AA/1039:1041 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_8CMJ_046 | 1/AA/1014:1019, 1/AA/1033:1036 | No text annotation | ||
| IL_8CMJ_259 | 1/AA/1069:1071, 1/AA/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8CMJ_049 | 1/AA/1074:1076, 1/AA/1083:1084 | Single bulged A | geometric IL_4P43_002 NA | |
| IL_8CMJ_050 | 1/AA/1120:1122, 1/AA/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8CMJ_052 | 1/AA/1167:1171, 1/AA/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8CMJ_053 | 1/AA/1173:1180, 1/AA/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_8CMJ_054 | 1/AA/1180:1182, 1/AA/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_8CMJ_056 | 1/AA/1187:1194, 1/AA/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8CMJ_057 | 1/AA/1194:1205, 1/AA/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8CMJ_058 | 1/AA/1207:1209, 1/AA/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8CMJ_059 | 1/AA/1218:1226, 1/AA/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8CMJ_060 | 1/AA/1234:1238, 1/AA/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_8CMJ_061 | 1/AA/1262:1266, 1/AA/1275:1277 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_8CMJ_062 | 1/AA/1376:1378, 1/AA/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8CMJ_063 | 1/AA/1385:1387, 1/AA/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_8CMJ_064 | 1/AA/1388:1395, 1/AA/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8CMJ_065 | 1/AA/1398:1400, 1/AA/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8CMJ_262 | 1/AA/1444:1450, 1/AA/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_26307.2 | |
| IL_8CMJ_263 | 1/AA/1501:1505, 1/AA/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8CMJ_068 | 1/AA/1532:1536, 1/AA/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_8CMJ_069 | 1/AA/1561:1563, 1/AA/1577:1579 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_8CMJ_070 | 1/AA/1618:1621, 1/AA/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8CMJ_071 | 1/AA/1623:1624, 1/AA/1819:1822 | Multiple bulged bases | geometric IL_4YAZ_007 IL_82107.5 | |
| IL_8CMJ_072 | 1/AA/1627:1631, 1/AA/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_8CMJ_073 | 1/AA/1645:1649, 1/AA/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8CMJ_074 | 1/AA/1661:1663, 1/AA/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8CMJ_076 | 1/AA/1669:1670, 1/AA/1778:1780 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8CMJ_077 | 1/AA/1670:1671, 1/AA/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_8CMJ_078 | 1/AA/1694:1698, 1/AA/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8CMJ_079 | 1/AA/1702:1707, 1/AA/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_8CMJ_080 | 1/AA/1711:1717, 1/AA/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8CMJ_265 | 1/AA/1711:1718, 1/AA/1726:1733 | Kink-turn | geometric IL_7JRS_002 IL_70923.9 | |
| IL_8CMJ_081 | 1/AA/1883:1889, 1/AA/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8CMJ_082 | 1/AA/1895:1897, 1/AA/2338:2340 | Isolated tWW turn | geometric IL_4WF9_063 IL_67095.2 | |
| IL_8CMJ_266 | 1/AA/1898:1901, 1/AA/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_8CMJ_084 | 1/AA/1901:1906, 1/AA/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8CMJ_085 | 1/AA/1918:1923, 1/AA/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8CMJ_086 | 1/AA/1940:1942, 1/AA/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8CMJ_087 | 1/AA/1947:1948, 1/AA/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8CMJ_088 | 1/AA/2128:2129, 1/AA/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8CMJ_089 | 1/AA/2156:2161, 1/AA/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8CMJ_090 | 1/AA/2196:2199, 1/AA/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8CMJ_091 | 1/AA/2200:2201, 1/AA/2241:2244 | Stack outside cWW | geometric IL_6JQ6_004 IL_66635.5 | |
| IL_8CMJ_092 | 1/AA/2204:2206, 1/AA/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8CMJ_093 | 1/AA/2206:2210, 1/AA/2235:2237 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_90351.1 | |
| IL_8CMJ_094 | 1/AA/2211:2217, 1/AA/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8CMJ_095 | 1/AA/2276:2277, 1/AA/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_8CMJ_268 | 1/AA/2277:2288, 1/AA/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8CMJ_097 | 1/AA/2391:2394, 1/AA/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8CMJ_098 | 1/AA/2396:2398, 1/AA/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8CMJ_099 | 1/AA/2409:2411, 1/AA/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_8CMJ_100 | 1/AA/2412:2413, 1/AA/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8CMJ_102 | 1/AA/2423:2425, 1/AA/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_8CMJ_103 | 1/AA/2444:2445, 1/AA/2501:2503 | Major groove platform | geometric IL_1S03_004 IL_48076.6 | |
| IL_8CMJ_293 | 1/AA/2446:2450, 1/AA/2497:2500 | No text annotation | ||
| IL_8CMJ_270 | 1/AA/2452:2469, 1/AA/2476:2495 | No text annotation | ||
| IL_8CMJ_105 | 1/AA/2520:2526, 1/AA/2584:2587 | No text annotation | homologous IL_8P9A_324 IL_00555.1 | |
| IL_8CMJ_106 | 1/AA/2614:2615, 1/AA/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_8CMJ_107 | 1/AA/2666:2668, 1/AA/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8CMJ_108 | 1/AA/2714:2716, 1/AA/2740:2741 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_8CMJ_109 | 1/AA/2718:2721, 1/AA/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_8CMJ_111 | 1/AA/2770:2773, 1/AA/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_8CMJ_112 | 1/AA/2823:2824, 1/AA/2865:2867 | Major groove platform | geometric IL_5J7L_028 IL_48076.6 | |
| IL_8CMJ_113 | 1/AA/2824:2826, 1/AA/2863:2865 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_8CMJ_271 | 1/AA/2824:2828, 1/AA/2862:2865 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8CMJ_114 | 1/AA/2826:2828, 1/AA/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8CMJ_115 | 1/AA/2828:2831, 1/AA/2857:2862 | No text annotation | ||
| IL_8CMJ_116 | 1/AA/2835:2839, 1/AA/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_8CMJ_117 | 1/AA/2876:2877, 1/AA/2949:2951 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
| IL_8CMJ_119 | 1/AA/2879:2881, 1/AA/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_8CMJ_120 | 1/AA/2881:2882, 1/AA/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_8CMJ_121 | 1/AA/2889:2891, 1/AA/2912:2914 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_8CMJ_273 | 1/AA/2889:2892, 1/AA/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_8CMJ_122 | 1/AA/2891:2892, 1/AA/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8CMJ_123 | 1/AA/2918:2920, 1/AA/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8CMJ_125 | 1/AA/2960:2961, 1/AA/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_8CMJ_126 | 1/AA/3004:3007, 1/AA/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8CMJ_127 | 1/AA/3012:3014, 1/AA/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8CMJ_128 | 1/AA/3018:3025, 1/AA/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8CMJ_129 | 1/AA/3047:3051, 1/AA/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8CMJ_130 | 1/AA/3054:3059, 1/AA/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_8CMJ_131 | 1/AA/3063:3064, 1/AA/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8CMJ_132 | 1/AA/3103:3107, 1/AA/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8CMJ_133 | 1/AA/3164:3166, 1/AA/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8CMJ_274 | 1/AA/3167:3170, 1/AA/3280:3283 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_8CMJ_134 | 1/AA/3168:3170, 1/AA/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_8CMJ_135 | 1/AA/3177:3179, 1/AA/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_8CMJ_136 | 1/AA/3179:3188, 1/AA/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_8CMJ_137 | 1/AA/3193:3194, 1/AA/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_8CMJ_139 | 1/AA/3225:3229, 1/AA/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_8CMJ_140 | 1/AA/3233:3235, 1/AA/3252:3254 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_8CMJ_141 | 1/AA/3235:3238, 1/AA/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_77658.1 | |
| IL_8CMJ_142 | 1/AA/3300:3303, 1/AA/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8CMJ_143 | 1/AA/3318:3320, 1/AA/3387:3388 | Single bulged U | geometric IL_7RQB_008 NA | |
| IL_8CMJ_144 | 1/AA/3324:3325, 1/AA/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_8CMJ_145 | 1/AA/3328:3330, 1/AA/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8CMJ_146 | 1/AA/3332:3337, 1/AA/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8CMJ_147 | 1/AA/3340:3342, 1/AA/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8CMJ_148 | 1/AA/3342:3345, 1/AA/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8CMJ_149 | 1/AA/3347:3350, 1/AA/3356:3358 | No text annotation | ||
| IL_8CMJ_150 | 1/BB/15:16, 1/BB/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8CMJ_151 | 1/BB/21:28, 1/BB/52:58 | No text annotation | ||
| IL_8CMJ_276 | 1/BB/21:29, 1/BB/49:58 | No text annotation | ||
| IL_8CMJ_152 | 1/BB/28:29, 1/BB/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_8CMJ_153 | 1/BB/29:30, 1/BB/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_8CMJ_154 | 1/BB/32:36, 1/BB/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_8CMJ_155 | 1/BB/72:80, 1/BB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8CMJ_156 | 1/BB/84:87, 1/BB/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8CMJ_157 | 1/CC/44:64, 1/CC/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8CMJ_158 | 1/CC/64:66, 1/CC/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_8CMJ_159 | 1/CC/68:69, 1/CC/89:91 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_8CMJ_160 | 1/c/24:26, 1/c/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8CMJ_162 | 1/c/35:37, 1/c/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_8CMJ_163 | 1/c/37:41, 1/c/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_8CMJ_164 | 1/c/42:48, 1/c/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8CMJ_165 | 1/c/50:52, 1/c/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8CMJ_166 | 1/c/58:63, 1/c/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8CMJ_167 | 1/c/64:69, 1/c/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8CMJ_168 | 1/c/109:112, 1/c/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8CMJ_169 | 1/c/113:116, 1/c/300:301 | Single bulged A | geometric IL_4WF9_098 IL_31462.7 | |
| IL_8CMJ_170 | 1/c/117:122, 1/c/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8CMJ_171 | 1/c/142:149, 1/c/165:172 | No text annotation | homologous IL_8P9A_383 IL_80604.6 | |
| IL_8CMJ_172 | 1/c/149:154, 1/c/160:165 | No text annotation | ||
| IL_8CMJ_173 | 1/c/204:206, 1/c/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_8CMJ_174 | 1/c/206:208, 1/c/257:259 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_87907.2 | |
| IL_8CMJ_277 | 1/c/270:273, 1/c/283:285 | No text annotation | homologous IL_8P9A_389 IL_15698.3 | |
| IL_8CMJ_178 | 1/c/311:316, 1/c/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8CMJ_179 | 1/c/318:323, 1/c/345:346 | No text annotation | geometric IL_4ERD_001 IL_84476.1 | |
| IL_8CMJ_180 | 1/c/363:365, 1/c/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8CMJ_181 | 1/c/389:391, 1/c/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8CMJ_278 | 1/c/411:413, 1/c/420:423 | No text annotation | geometric IL_4V87_185 NA | |
| IL_8CMJ_182 | 1/c/439:441, 1/c/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8CMJ_183 | 1/c/443:447, 1/c/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8CMJ_184 | 1/c/447:448, 1/c/458:460 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_8CMJ_186 | 1/c/481:484, 1/c/503:507 | No text annotation | ||
| IL_8CMJ_187 | 1/c/514:516, 1/c/536:543 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8CMJ_294 | 1/c/517:518, 1/c/533:535 | No text annotation | homologous IL_8CRE_419 IL_51454.3 | |
| IL_8CMJ_189 | 1/c/550:557, 1/c/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_8CMJ_190 | 1/c/557:559, 1/c/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_8CMJ_280 | 1/c/562:568, 1/c/575:583 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
| IL_8CMJ_192 | 1/c/616:622, 1/c/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8CMJ_193 | 1/c/624:626, 1/c/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8CMJ_194 | 1/c/627:631, 1/c/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8CMJ_195 | 1/c/643:644, 1/c/690:692 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_8CMJ_196 | 1/c/646:648, 1/c/686:688 | No text annotation | ||
| IL_8CMJ_282 | 1/c/745:746, 1/c/805:807 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_8CMJ_283 | 1/c/746:747, 1/c/802:805 | No text annotation | homologous IL_8P9A_412 IL_68140.4 | |
| IL_8CMJ_198 | 1/c/748:750, 1/c/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8CMJ_199 | 1/c/751:759, 1/c/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8CMJ_200 | 1/c/865:866, 1/c/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8CMJ_295 | 1/c/868:870, 1/c/957:960 | No text annotation | homologous IL_8CRE_432 IL_10167.6 | |
| IL_8CMJ_202 | 1/c/871:873, 1/c/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_8CMJ_203 | 1/c/874:878, 1/c/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8CMJ_204 | 1/c/885:888, 1/c/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8CMJ_205 | 1/c/893:899, 1/c/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8CMJ_206 | 1/c/985:990, 1/c/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_8CMJ_207 | 1/c/990:994, 1/c/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_8CMJ_208 | 1/c/1034:1036, 1/c/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8CMJ_209 | 1/c/1041:1044, 1/c/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8CMJ_210 | 1/c/1051:1053, 1/c/1066:1067 | No text annotation | ||
| IL_8CMJ_211 | 1/c/1111:1118, 1/c/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8CMJ_212 | 1/c/1146:1147, 1/c/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8CMJ_213 | 1/c/1149:1151, 1/c/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_8CMJ_296 | 1/c/1157:1160, 1/c/1617:1621 | C-loop | geometric IL_8C3A_449 NA | |
| IL_8CMJ_215 | 1/c/1173:1176, 1/c/1463:1466 | No text annotation | ||
| IL_8CMJ_216 | 1/c/1178:1179, 1/c/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8CMJ_284 | 1/c/1207:1209, 1/c/1454:1455 | Multiple bulged bases | geometric IL_3IWN_004 IL_82107.5 | |
| IL_8CMJ_217 | 1/c/1213:1215, 1/c/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_8CMJ_218 | 1/c/1233:1237, 1/c/1248:1252 | No text annotation | ||
| IL_8CMJ_285 | 1/c/1268:1270, 1/c/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8CMJ_220 | 1/c/1272:1276, 1/c/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_8CMJ_297 | 1/c/1272:1278, 1/c/1430:1438 | No text annotation | geometric IL_8P9A_439 IL_86012.1 | |
| IL_8CMJ_298 | 1/c/1276:1278, 1/c/1430:1436 | No text annotation | homologous IL_8P9A_440 IL_49061.1 | |
| IL_8CMJ_287 | 1/c/1280:1281, 1/c/1426:1428 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8CMJ_223 | 1/c/1290:1292, 1/c/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_8CMJ_224 | 1/c/1306:1308, 1/c/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_8CMJ_226 | 1/c/1339:1342, 1/c/1383:1385 | Isolated non-canonical cWW pair | geometric IL_5MSF_001 IL_87907.2 | |
| IL_8CMJ_228 | 1/c/1345:1348, 1/c/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8CMJ_229 | 1/c/1351:1358, 1/c/1365:1374 | No text annotation | ||
| IL_8CMJ_230 | 1/c/1389:1391, 1/c/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_8CMJ_232 | 1/c/1480:1487, 1/c/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_8CMJ_288 | 1/c/1480:1495, 1/c/1512:1527 | No text annotation | ||
| IL_8CMJ_233 | 1/c/1488:1494, 1/c/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_8CMJ_234 | 1/c/1495:1498, 1/c/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_8CMJ_289 | 1/c/1495:1500, 1/c/1507:1512 | No text annotation | ||
| IL_8CMJ_236 | 1/c/1540:1546, 1/c/1565:1571 | No text annotation | ||
| IL_8CMJ_290 | 1/c/1540:1548, 1/c/1563:1571 | No text annotation | ||
| IL_8CMJ_240 | 1/c/1636:1638, 1/c/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8CMJ_241 | 1/c/1638:1641, 1/c/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_8CMJ_242 | 1/c/1642:1644, 1/c/1757:1759 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_87907.2 | |
| IL_8CMJ_243 | 1/c/1644:1647, 1/c/1753:1757 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_8CMJ_244 | 1/c/1650:1652, 1/c/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8CMJ_245 | 1/c/1653:1656, 1/c/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8CMJ_246 | 1/c/1656:1658, 1/c/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_8CMJ_247 | 1/c/1665:1667, 1/c/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8CMJ_248 | 1/c/1669:1672, 1/c/1729:1732 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_8CMJ_249 | 1/c/1672:1674, 1/c/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_8CMJ_250 | 1/c/1675:1678, 1/c/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_8CMJ_251 | 1/c/1678:1682, 1/c/1719:1723 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CMJ_001 | No text annotation | ||
| IL_8CMJ_005 | tSH-tHW-tHH-tHS | ||
| IL_8CMJ_009 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_011 | No text annotation | ||
| IL_8CMJ_012 | No text annotation | ||
| IL_8CMJ_013 | 8-nt loop receptor | ||
| IL_8CMJ_019 | No text annotation | ||
| IL_8CMJ_029 | No text annotation | ||
| IL_8CMJ_030 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_258 | No text annotation | ||
| IL_8CMJ_047 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_048 | Tandem non-canonical cWW pairs | ||
| IL_8CMJ_260 | No text annotation | ||
| IL_8CMJ_051 | Tandem non-canonical cWW pairs | ||
| IL_8CMJ_055 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_261 | No text annotation | ||
| IL_8CMJ_066 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_8CMJ_067 | No text annotation | ||
| IL_8CMJ_264 | No text annotation | ||
| IL_8CMJ_075 | No text annotation | ||
| IL_8CMJ_083 | Major groove platform with extra pair | ||
| IL_8CMJ_267 | No text annotation | ||
| IL_8CMJ_096 | No text annotation | ||
| IL_8CMJ_101 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_269 | No text annotation | ||
| IL_8CMJ_104 | No text annotation | ||
| IL_8CMJ_110 | No text annotation | ||
| IL_8CMJ_272 | No text annotation | ||
| IL_8CMJ_118 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_124 | No text annotation | ||
| IL_8CMJ_138 | Isolated cWS basepair | ||
| IL_8CMJ_275 | Isolated non-canonical cWW with bulges | ||
| IL_8CMJ_161 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_175 | Tandem non-canonical cWW pairs | ||
| IL_8CMJ_176 | No text annotation | ||
| IL_8CMJ_177 | No text annotation | ||
| IL_8CMJ_185 | No text annotation | ||
| IL_8CMJ_279 | No text annotation | ||
| IL_8CMJ_188 | Minor groove platform with extra cWW | ||
| IL_8CMJ_191 | No text annotation | ||
| IL_8CMJ_281 | No text annotation | ||
| IL_8CMJ_197 | No text annotation | ||
| IL_8CMJ_201 | Tandem non-canonical cWW pairs | ||
| IL_8CMJ_214 | No text annotation | ||
| IL_8CMJ_219 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_286 | No text annotation | ||
| IL_8CMJ_221 | Minor groove platform related | ||
| IL_8CMJ_222 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_225 | No text annotation | ||
| IL_8CMJ_227 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_231 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_235 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_237 | No text annotation | ||
| IL_8CMJ_238 | Isolated non-canonical cWW pair | ||
| IL_8CMJ_239 | No text annotation | ||
| IL_8CMJ_252 | No text annotation | ||
| IL_8CMJ_253 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CMJ_001 | 1/AA/113:123, 1/AA/149:158, 1/AA/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8CMJ_021 | 1/AA/113:124, 1/AA/144:158, 1/AA/263:267 | No text annotation | ||
| J3_8CMJ_022 | 1/AA/340:356, 1/AA/363:368, 1/CC/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_8CMJ_023 | 1/AA/369:376, 1/AA/403:404, 1/CC/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8CMJ_024 | 1/AA/369:379, 1/AA/390:404, 1/CC/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_8CMJ_025 | 1/AA/502:503, 1/AA/588:597, 1/AA/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_8CMJ_002 | 1/AA/814:820, 1/AA/905:907, 1/AA/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8CMJ_026 | 1/AA/829:831, 1/AA/863:867, 1/AA/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8CMJ_027 | 1/AA/986:987, 1/AA/1062:1066, 1/AA/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8CMJ_004 | 1/AA/1230:1232, 1/AA/1256:1262, 1/AA/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_8CMJ_005 | 1/AA/1479:1485, 1/AA/1857:1859, 1/AA/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8CMJ_006 | 1/AA/1488:1491, 1/AA/1837:1843, 1/AA/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8CMJ_028 | 1/AA/1526:1531, 1/AA/1591:1595, 1/AA/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8CMJ_029 | 1/AA/1537:1542, 1/AA/1551:1561, 1/AA/1579:1584 | No text annotation | ||
| J3_8CMJ_030 | 1/AA/1631:1633, 1/AA/1640:1645, 1/AA/1810:1811 | No text annotation | homologous J3_8P9A_057 NA | |
| J3_8CMJ_031 | 1/AA/1654:1658, 1/AA/1791:1792, 1/AA/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8CMJ_047 | 1/AA/2432:2435, 1/AA/2512:2517, 1/AA/2590:2597 | No text annotation | homologous J3_8CRE_019 J3_84052.1 | |
| J3_8CMJ_033 | 1/AA/2529:2533, 1/AA/2546:2563, 1/AA/2578:2581 | No text annotation | ||
| J3_8CMJ_034 | 1/AA/2651:2653, 1/AA/2754:2765, 1/AA/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8CMJ_009 | 1/AA/2664:2666, 1/AA/2690:2692, 1/AA/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8CMJ_010 | 1/AA/2886:2889, 1/AA/2914:2916, 1/AA/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8CMJ_036 | 1/AA/3171:3176, 1/AA/3212:3220, 1/AA/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8CMJ_011 | 1/AA/3298:3300, 1/AA/3314:3318, 1/AA/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_8CMJ_037 | 1/BB/9:14, 1/BB/66:67, 1/BB/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8CMJ_038 | 1/CC/44:45, 1/CC/58:64, 1/CC/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8CMJ_039 | 1/c/41:42, 1/c/433:439, 1/c/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_8CMJ_040 | 1/c/633:635, 1/c/861:865, 1/c/965:966 | No text annotation | homologous J3_8P9A_071 J3_56052.5 | |
| J3_8CMJ_012 | 1/c/760:763, 1/c/773:775, 1/c/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8CMJ_013 | 1/c/881:884, 1/c/928:936, 1/c/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8CMJ_014 | 1/c/1037:1039, 1/c/1079:1083, 1/c/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8CMJ_015 | 1/c/1161:1164, 1/c/1581:1587, 1/c/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8CMJ_016 | 1/c/1168:1171, 1/c/1468:1470, 1/c/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8CMJ_042 | 1/c/1180:1188, 1/c/1197:1207, 1/c/1455:1458 | No text annotation | ||
| J3_8CMJ_017 | 1/c/1180:1187, 1/c/1198:1209, 1/c/1454:1458 | No text annotation | ||
| J3_8CMJ_043 | 1/c/1215:1233, 1/c/1252:1267, 1/c/1442:1448 | No text annotation | ||
| J3_8CMJ_018 | 1/c/1283:1288, 1/c/1327:1332, 1/c/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_8CMJ_044 | 1/c/1293:1294, 1/c/1303:1306, 1/c/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8CMJ_019 | 1/c/1336:1338, 1/c/1386:1389, 1/c/1412:1415 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_8CMJ_045 | 1/c/1336:1338, 1/c/1386:1391, 1/c/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8CMJ_020 | 1/c/1470:1474, 1/c/1533:1540, 1/c/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8CMJ_001 | 1/AA/112:113, 1/AA/267:272, 1/AA/293:299, 1/AA/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8CMJ_002 | 1/AA/185:189, 1/AA/205:208, 1/AA/212:214, 1/AA/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_8CMJ_003 | 1/AA/1451:1457, 1/AA/1475:1476, 1/AA/1877:1880, 1/AA/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_8CMJ_004 | 1/AA/1492:1496, 1/AA/1520:1525, 1/AA/1614:1615, 1/AA/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_8CMJ_014 | 1/AA/1674:1675, 1/AA/1693:1694, 1/AA/1752:1753, 1/AA/1772:1773 | No text annotation | homologous J4_8CRE_005 J4_24280.2 | |
| J4_8CMJ_005 | 1/AA/1674:1675, 1/AA/1693:1694, 1/AA/1752:1754, 1/AA/1771:1773 | No text annotation | ||
| J4_8CMJ_006 | 1/AA/2130:2134, 1/AA/2146:2150, 1/AA/2186:2190, 1/AA/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8CMJ_007 | 1/AA/2192:2194, 1/AA/2248:2249, 1/AA/2267:2276, 1/AA/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8CMJ_008 | 1/AA/2654:2658, 1/AA/2712:2714, 1/AA/2741:2742, 1/AA/2751:2753 | No text annotation | ||
| J4_8CMJ_009 | 1/AA/2654:2658, 1/AA/2712:2716, 1/AA/2740:2742, 1/AA/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8CMJ_010 | 1/AA/3010:3012, 1/AA/3042:3043, 1/AA/3098:3100, 1/AA/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_8CMJ_011 | 1/c/99:107, 1/c/307:309, 1/c/357:361, 1/c/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_8CMJ_012 | 1/c/137:141, 1/c/173:183, 1/c/202:204, 1/c/263:266 | No text annotation | ||
| J4_8CMJ_013 | 1/c/622:624, 1/c/975:980, 1/c/1021:1032, 1/c/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8CMJ_001 | 1/AA/20:22, 1/CC/35:42, 1/CC/102:107, 1/CC/115:116, 1/CC/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8CMJ_002 | 1/AA/658:663, 1/AA/799:802, 1/AA/941:944, 1/AA/1375:1376, 1/AA/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_8CMJ_003 | 1/AA/675:678, 1/AA/702:706, 1/AA/713:721, 1/AA/749:751, 1/AA/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_8CMJ_004 | 1/AA/1898:1914, 1/AA/1938:1939, 1/AA/2109:2110, 1/AA/2114:2122, 1/AA/2331:2337 | No text annotation | ||
| J5_8CMJ_005 | 1/AA/1901:1914, 1/AA/1938:1939, 1/AA/2109:2110, 1/AA/2114:2122, 1/AA/2331:2336 | No text annotation | ||
| J5_8CMJ_006 | 1/AA/2399:2406, 1/AA/2815:2823, 1/AA/2867:2876, 1/AA/2951:2957, 1/AA/2975:2980 | No text annotation | ||
| J5_8CMJ_007 | 1/AA/2416:2419, 1/AA/2611:2614, 1/AA/2627:2628, 1/AA/2650:2651, 1/AA/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8CMJ_008 | 1/c/31:35, 1/c/473:479, 1/c/509:514, 1/c/543:546, 1/c/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8CMJ_009 | 1/c/31:35, 1/c/473:479, 1/c/509:516, 1/c/536:546, 1/c/592:595 | No text annotation | ||
| J5_8CMJ_010 | 1/c/54:57, 1/c/90:97, 1/c/386:388, 1/c/409:411, 1/c/423:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J6_8CMJ_001 | 1/AA/22:27, 1/AA/58:68, 1/AA/75:79, 1/AA/106:110, 1/AA/321:331, 1/CC/32:35 | No text annotation | ||
| J7_8CMJ_001 | 1/AA/949:954, 1/AA/967:968, 1/AA/1114:1117, 1/AA/1141:1146, 1/AA/1157:1161, 1/AA/1338:1339, 1/AA/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8CMJ_003 | No text annotation | ||
| J3_8CMJ_032 | No text annotation | ||
| J3_8CMJ_007 | No text annotation | ||
| J3_8CMJ_008 | No text annotation | ||
| J3_8CMJ_035 | No text annotation | ||
| J3_8CMJ_041 | No text annotation | ||
| J3_8CMJ_046 | No text annotation |
Coloring options: