3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CMJ_017 not in the Motif Atlas
Homologous match to HL_5TBW_017
Geometric discrepancy: 0.2541
The information below is about HL_5TBW_017
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8CMJ|1|AA|C|732
8CMJ|1|AA|G|733
8CMJ|1|AA|C|734
8CMJ|1|AA|A|735
8CMJ|1|AA|A|736
8CMJ|1|AA|G|737

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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