HL_8CMJ_019
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_019 not in the Motif Atlas
- Homologous match to HL_5TBW_019
- Geometric discrepancy: 0.1485
- The information below is about HL_5TBW_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8CMJ|1|AA|G|844
8CMJ|1|AA|G|845
8CMJ|1|AA|A|846
8CMJ|1|AA|A|847
8CMJ|1|AA|A|848
8CMJ|1|AA|C|849
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain b
- 60S ribosomal protein L43-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 40S ribosomal protein S11-A
- Chain p
- 40S ribosomal protein S13
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