HL_8CMJ_023

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_023 not in the Motif Atlas

Geometric match to HL_5J7L_025

Geometric discrepancy: 0.3223

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8CMJ|1|AA|C|1023
8CMJ|1|AA|G|1024
8CMJ|1|AA|A|1025
8CMJ|1|AA|A|1026
8CMJ|1|AA|A|1027
8CMJ|1|AA|U|1028
8CMJ|1|AA|G|1029

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain NN

60S ribosomal protein L11-A

Chain c

Small subunit ribosomal RNA; SSU rRNA

Chain r

40S ribosomal protein S15