HL_8CMJ_025

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8CMJ|1|AA|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_025 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.2058

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CMJ|1|AA|G|1126
8CMJ|1|AA|G|1127
8CMJ|1|AA|U|1128
8CMJ|1|AA|A|1129
8CMJ|1|AA|A|1130
8CMJ|1|AA|G|1131
8CMJ|1|AA|C|1132

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29