HL_8CMJ_035

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8CMJ|1|AA|U|1606, 8CMJ|1|AA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.2208

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CMJ|1|AA|G|1599
8CMJ|1|AA|U|1600
8CMJ|1|AA|U|1601
8CMJ|1|AA|A|1602
8CMJ|1|AA|A|1603
8CMJ|1|AA|G|1604
8CMJ|1|AA|A|1605
8CMJ|1|AA|U|1606
8CMJ|1|AA|U|1607
8CMJ|1|AA|C|1608

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain J

60S ribosomal protein L25

Chain S

60S ribosomal protein L34-A