HL_8CMJ_047

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8CMJ|1|AA|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3036

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CMJ|1|AA|A|2164
8CMJ|1|AA|G|2165
8CMJ|1|AA|A|2166
8CMJ|1|AA|A|2167
8CMJ|1|AA|A|2168
8CMJ|1|AA|G|2169
8CMJ|1|AA|U|2170

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L15-A