HL_8CMJ_051

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8CMJ|1|AA|A|2372, 8CMJ|1|AA|A|2373, 8CMJ|1|AA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1285

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8CMJ|1|AA|G|2369
8CMJ|1|AA|G|2370
8CMJ|1|AA|G|2371
8CMJ|1|AA|A|2372
8CMJ|1|AA|A|2373
8CMJ|1|AA|C|2374
8CMJ|1|AA|G|2375
8CMJ|1|AA|G|2376
8CMJ|1|AA|G|2377
8CMJ|1|AA|C|2378

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain Q

60S ribosomal protein L32