HL_8CMJ_053

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

8CMJ|1|AA|C|2539, 8CMJ|1|AA|U|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|G|2533
8CMJ|1|AA|G|2534
8CMJ|1|AA|A|2535
8CMJ|1|AA|A|2536
8CMJ|1|AA|U|2537
8CMJ|1|AA|U|2538
8CMJ|1|AA|C|2539
8CMJ|1|AA|A|2540
8CMJ|1|AA|U|2541
8CMJ|1|AA|U|2542
8CMJ|1|AA|U|2543
8CMJ|1|AA|U|2544
8CMJ|1|AA|C|2545
8CMJ|1|AA|C|2546

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain e

40S ribosomal protein S1-A