HL_8CMJ_055
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8CMJ|1|AA|G|2618
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_055 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.3491
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8CMJ|1|AA|C|2616
8CMJ|1|AA|U|2617
8CMJ|1|AA|G|2618
8CMJ|1|AA|OMG|2619
8CMJ|1|AA|G|2620
8CMJ|1|AA|G|2621
8CMJ|1|AA|C|2622
8CMJ|1|AA|G|2623
8CMJ|1|AA|G|2624
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain MM
- 60S ribosomal protein L10
- Chain N
- 60S ribosomal protein L29
Coloring options: