3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
8CMJ|1|AA|G|2618
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CMJ_055 not in the Motif Atlas
Homologous match to HL_8C3A_055
Geometric discrepancy: 0.3491
The information below is about HL_8C3A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

8CMJ|1|AA|C|2616
8CMJ|1|AA|U|2617
8CMJ|1|AA|G|2618
8CMJ|1|AA|OMG|2619
8CMJ|1|AA|G|2620
8CMJ|1|AA|G|2621
8CMJ|1|AA|C|2622
8CMJ|1|AA|G|2623
8CMJ|1|AA|G|2624

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain MM
60S ribosomal protein L10
Chain N
60S ribosomal protein L29

Coloring options:


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