HL_8CMJ_057

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_057 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.3908

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CMJ|1|AA|A|2673
8CMJ|1|AA|A|2674
8CMJ|1|AA|C|2675
8CMJ|1|AA|A|2676
8CMJ|1|AA|G|2677
8CMJ|1|AA|A|2678
8CMJ|1|AA|A|2679
8CMJ|1|AA|A|2680
8CMJ|1|AA|U|2681

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain NN

60S ribosomal protein L11-A