HL_8CMJ_068

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8CMJ|1|AA|G|3116, 8CMJ|1|AA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1101

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CMJ|1|AA|C|3110
8CMJ|1|AA|U|3111
8CMJ|1|AA|G|3112
8CMJ|1|AA|A|3113
8CMJ|1|AA|A|3114
8CMJ|1|AA|C|3115
8CMJ|1|AA|G|3116
8CMJ|1|AA|C|3117
8CMJ|1|AA|C|3118
8CMJ|1|AA|U|3119
8CMJ|1|AA|C|3120
8CMJ|1|AA|U|3121
8CMJ|1|AA|A|3122
8CMJ|1|AA|A|3123
8CMJ|1|AA|G|3124

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40