HL_8CMJ_079

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CAAUACAG

Length

8 nucleotides

Bulged bases

8CMJ|1|c|A|72, 8CMJ|1|c|U|77

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_079 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.129

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8CMJ|1|c|C|70
8CMJ|1|c|A|71
8CMJ|1|c|A|72
8CMJ|1|c|U|77
8CMJ|1|c|A|78
8CMJ|1|c|C|79
8CMJ|1|c|A|80
8CMJ|1|c|G|81

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A