HL_8CMJ_089

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

ACAAUGUAAAUACCUU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|c|A|518
8CMJ|1|c|C|519
8CMJ|1|c|A|520
8CMJ|1|c|A|521
8CMJ|1|c|U|522
8CMJ|1|c|G|523
8CMJ|1|c|U|524
8CMJ|1|c|A|525
8CMJ|1|c|A|526
8CMJ|1|c|A|527
8CMJ|1|c|U|528
8CMJ|1|c|A|529
8CMJ|1|c|C|530
8CMJ|1|c|C|531
8CMJ|1|c|U|532
8CMJ|1|c|U|533

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A