HL_8CMJ_091

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8CMJ|1|c|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_091 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.191

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8CMJ|1|c|U|764
8CMJ|1|c|G|765
8CMJ|1|c|U|766
8CMJ|1|c|U|767
8CMJ|1|c|C|768
8CMJ|1|c|A|769
8CMJ|1|c|A|770
8CMJ|1|c|A|771
8CMJ|1|c|G|772

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A

Chain m

40S ribosomal protein S9-A