HL_8CMJ_093

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CGUUUAUCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|c|C|818
8CMJ|1|c|G|819
8CMJ|1|c|U|820
8CMJ|1|c|U|821
8CMJ|1|c|U|822
8CMJ|1|c|A|850
8CMJ|1|c|U|851
8CMJ|1|c|C|852
8CMJ|1|c|G|853

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain k

40S ribosomal protein S7-A