HL_8CMJ_107
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CAUUGUAAUUAUUG
- Length
- 14 nucleotides
- Bulged bases
- 8CMJ|1|c|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|c|C|1549
8CMJ|1|c|A|1550
8CMJ|1|c|U|1551
8CMJ|1|c|U|1552
8CMJ|1|c|G|1553
8CMJ|1|c|U|1554
8CMJ|1|c|A|1555
8CMJ|1|c|A|1556
8CMJ|1|c|U|1557
8CMJ|1|c|U|1558
8CMJ|1|c|A|1559
8CMJ|1|c|U|1560
8CMJ|1|c|U|1561
8CMJ|1|c|G|1562
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain r
- 40S ribosomal protein S15
- Chain u
- 40S ribosomal protein S18-A
- Chain v
- 40S ribosomal protein S19-A
Coloring options: