HL_8CMJ_111

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8CMJ|1|AA|U|545, 8CMJ|1|AA|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_111 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.439

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57992.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|C|543
8CMJ|1|AA|C|544
8CMJ|1|AA|U|545
8CMJ|1|AA|C|546
8CMJ|1|AA|G|547
8CMJ|1|AA|G|548

Current chains

Chain AA

25S ribosomal RNA

Nearby chains