HL_8CMJ_120

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8CMJ|1|c|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_120 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2581

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8CMJ|1|c|U|1055
8CMJ|1|c|U|1056
8CMJ|1|c|U|1057
8CMJ|1|c|U|1058
8CMJ|1|c|U|1059
8CMJ|1|c|U|1060
8CMJ|1|c|A|1061
8CMJ|1|c|A|1062
8CMJ|1|c|U|1063
8CMJ|1|c|G|1064

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain e

40S ribosomal protein S1-A