3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
UCUUG(1MA)AAC(A2M)
Length
10 nucleotides
Bulged bases
8CMJ|1|AA|U|642, 8CMJ|1|AA|C|648
QA status
Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CMJ_122 not in the Motif Atlas
Homologous match to HL_8CRE_013
Geometric discrepancy: 0.1555
The information below is about HL_8CRE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8CMJ|1|AA|U|640
8CMJ|1|AA|C|641
8CMJ|1|AA|U|642
8CMJ|1|AA|U|643
8CMJ|1|AA|G|644
8CMJ|1|AA|1MA|645
8CMJ|1|AA|A|646
8CMJ|1|AA|A|647
8CMJ|1|AA|C|648
8CMJ|1|AA|A2M|649

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain FF
60S ribosomal protein L3
Chain M
60S ribosomal protein L28
Chain N
60S ribosomal protein L29
Chain Q
60S ribosomal protein L32

Coloring options:


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