HL_8CRE_007

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8CRE|1|1|G|217, 8CRE|1|1|A|218, 8CRE|1|1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8CRE|1|1|G|215
8CRE|1|1|U|216
8CRE|1|1|G|217
8CRE|1|1|A|218
8CRE|1|1|G|219
8CRE|1|1|A|220
8CRE|1|1|A|221
8CRE|1|1|U|222
8CRE|1|1|C|223

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain l

60S ribosomal protein L4-B