HL_8CRE_008

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8CRE|1|1|G|283, 8CRE|1|1|A|284, 8CRE|1|1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CRE|1|1|U|278
8CRE|1|1|U|279
8CRE|1|1|U|280
8CRE|1|1|G|281
8CRE|1|1|G|282
8CRE|1|1|G|283
8CRE|1|1|A|284
8CRE|1|1|A|285
8CRE|1|1|U|286
8CRE|1|1|G|287

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-B

Chain t

60S ribosomal protein L13

Chain v

60S ribosomal protein L15-A