HL_8CRE_036

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8CRE|1|1|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8CRE|1|1|G|1676
8CRE|1|1|U|1677
8CRE|1|1|U|1678
8CRE|1|1|A|1679
8CRE|1|1|U|1680
8CRE|1|1|C|1681
8CRE|1|1|U|1682
8CRE|1|1|U|1683
8CRE|1|1|U|1684

Current chains

Chain 1

25S

Nearby chains

Chain 5

60S ribosomal protein L22-B

Chain z

60S ribosomal protein L19-A