HL_8CRE_047

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8CRE|1|1|A|2234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CRE|1|1|G|2231
8CRE|1|1|U|2232
8CRE|1|1|A|2233
8CRE|1|1|A|2234
8CRE|1|1|C|2235
8CRE|1|1|U|2236
8CRE|1|1|A|2237
8CRE|1|1|U|2238
8CRE|1|1|G|2239
8CRE|1|1|A|2240
8CRE|1|1|C|2241

Current chains

Chain 1

25S

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain g

40S ribosomal protein S30