HL_8CRE_061

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8CRE|1|1|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8CRE|1|1|A|2869
8CRE|1|1|G|2870
8CRE|1|1|C|2871
8CRE|1|1|A|2872
8CRE|1|1|G|2873
8CRE|1|1|A|2874
8CRE|1|1|A|2875
8CRE|1|1|U|2876

Current chains

Chain 1

25S

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B