HL_8CRE_098

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8CRE|1|AS|A|909, 8CRE|1|AS|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_098 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0471

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CRE|1|AS|G|906
8CRE|1|AS|C|907
8CRE|1|AS|G|908
8CRE|1|AS|A|909
8CRE|1|AS|A|910
8CRE|1|AS|A|911
8CRE|1|AS|G|912
8CRE|1|AS|A|913
8CRE|1|AS|C|914

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain BI

60S ribosomal protein L15-A

Chain CE

60S ribosomal protein L37-B