HL_8CRE_150

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_150 not in the Motif Atlas

Homologous match to HL_8C3A_073

Geometric discrepancy: 0.0407

The information below is about HL_8C3A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8CRE|1|AT|C|36
8CRE|1|AT|G|37
8CRE|1|AT|U|38
8CRE|1|AT|U|39
8CRE|1|AT|C|40
8CRE|1|AT|G|41

Current chains

Chain AT

5S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BF

60S ribosomal protein L11-B

Chain CL

60S ribosomal protein CAALFM_C304810CA