Motif HL_47787.1 Version HL_47787.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_069 | 7A0S | 0.3624 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW | |
| 2 | HL_4WF9_066 | 4WF9 | 0.2316 | 1 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW | |
| 3 | HL_4V9F_071 | 4V9F | 0.0000 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW | |
| 4 | HL_9DFE_068 | 9DFE | 0.0829 | 1 | 1B | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW | |
| 5 | HL_5J7L_203 | 5J7L | 0.0917 | 1 | DB | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW | |
| 6 | HL_1MJI_002 | 1MJI | 0.0990 | 1 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW | |
| 7 | HL_8C3A_073 | 8C3A | 0.2446 | 0 | 3 | 5S rRNA | C | 36 | G | 37 | U | 38 | U | 39 | C | 40 | G | 41 | cWW | |
| 8 | HL_8P9A_184 | 8P9A | 0.2549 | 0 | AS | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW | |
| 9 | HL_6AAY_001 | 6AAY | 0.7832 | 2 | B | RNA (52-MER) | C | 37 | A | 38 | U | 39 | U | 40 | U | 41 | G | 44 | cWW | |
| 10 | HL_7A0S_019 | 7A0S | 0.9188 | 0 | X | LSU rRNA | U | 622 | G | 623 | A | 624 | A | 625 | A | 626 | A | 627 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CAUCCCG | 1 |
| CAUUCCG | 1 |
| CGUUCG | 1 |
| CGUCCG | 1 |
| CAUUUUGG | 1 |
| UGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| AUCCC | 1 |
| AUUCC | 1 |
| GUUC | 1 |
| GUCC | 1 |
| AUUUUG | 1 |
| GAAA | 1 |
- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.44 | Max 0.97
Coloring options: