HL_8CRE_152
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CRE_152 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.0585
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CRE|1|AU|C|47
8CRE|1|AU|A|48
8CRE|1|AU|G|49
8CRE|1|AU|C|50
8CRE|1|AU|G|51
8CRE|1|AU|A|52
8CRE|1|AU|A|53
8CRE|1|AU|A|54
8CRE|1|AU|U|55
8CRE|1|AU|G|56
Current chains
- Chain AU
- 5.8S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS
- 60S ribosomal protein L25
- Chain CC
- Ribosomal protein L29
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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