HL_8CRE_166

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8CRE|1|B|A|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRE_166 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.0645

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8CRE|1|B|C|412
8CRE|1|B|C|413
8CRE|1|B|A|414
8CRE|1|B|A|415
8CRE|1|B|G|416
8CRE|1|B|G|417

Current chains

Chain B

18S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24