HL_8CRX_020

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CRX_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0796

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8CRX|1|A|C|881
8CRX|1|A|G|882
8CRX|1|A|C|883
8CRX|1|A|A|884
8CRX|1|A|A|885
8CRX|1|A|G|886

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain X

30S ribosomal protein bS22

Chain a

Large subunit ribosomal RNA; LSU rRNA