8CRX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CRX_001 | 1/A/16:26 | No text annotation | homologous HL_4LFB_001 HL_73535.2 | |
| HL_8CRX_003 | 1/A/159:164 | GNRA | homologous HL_4LFB_003 HL_34789.5 | |
| HL_8CRX_004 | 1/A/194:199 | GNRA variation | geometric HL_1L9A_001 NA | |
| HL_8CRX_005 | 1/A/214:221 | No text annotation | geometric HL_9E6Q_025 HL_46211.1 | |
| HL_8CRX_006 | 1/A/261:269 | GNRA related | homologous HL_4LFB_006 HL_87268.3 | |
| HL_8CRX_007 | 1/A/298:303 | GNRA | homologous HL_4LFB_007 HL_34789.5 | |
| HL_8CRX_008 | 1/A/322:335 | No text annotation | ||
| HL_8CRX_009 | 1/A/344:349 | UNCG | homologous HL_4LFB_009 HL_61337.5 | |
| HL_8CRX_010 | 1/A/381:386 | GNRA | homologous HL_4LFB_010 HL_34789.5 | |
| HL_8CRX_011 | 1/A/421:426 | UNCG | homologous HL_5J7L_011 NA | |
| HL_8CRX_012 | 1/A/456:461 | GNRA | homologous HL_4LFB_012 HL_34789.5 | |
| HL_8CRX_108 | 1/A/504:509 | GNRA variation | homologous HL_4LFB_033 HL_34789.5 | |
| HL_8CRX_014 | 1/A/599:605 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_8CRX_015 | 1/A/671:680 | No text annotation | homologous HL_4LFB_015 HL_38491.3 | |
| HL_8CRX_016 | 1/A/708:713 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8CRX_017 | 1/A/768:778 | No text annotation | homologous HL_4LFB_017 HL_38491.3 | |
| HL_8CRX_018 | 1/A/822:830 | No text annotation | ||
| HL_8CRX_019 | 1/A/846:851 | GNRA | homologous HL_4LFB_019 HL_34789.5 | |
| HL_8CRX_020 | 1/A/881:886 | GNRA | homologous HL_4LFB_020 HL_34789.5 | |
| HL_8CRX_021 | 1/A/947:956 | No text annotation | homologous HL_4LFB_021 HL_97521.2 | |
| HL_8CRX_022 | 1/A/997:1002 | GNRA | homologous HL_4LFB_022 HL_34789.5 | |
| HL_8CRX_023 | 1/A/1061:1066 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8CRX_024 | 1/A/1074:1081 | T-loop related | homologous HL_4LFB_025 HL_63894.3 | |
| HL_8CRX_027 | 1/A/1251:1256 | GNRA | homologous HL_4LFB_028 HL_34789.5 | |
| HL_8CRX_028 | 1/A/1300:1309 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8CRX_029 | 1/A/1342:1353 | No text annotation | homologous HL_4LFB_030 HL_86432.2 | |
| HL_8CRX_030 | 1/A/1435:1442 | No text annotation | ||
| HL_8CRX_031 | 1/A/1502:1507 | GNRA | homologous HL_4LFB_032 HL_34789.5 | |
| HL_8CRX_032 | 1/C/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20490.1 | |
| HL_8CRX_033 | 1/C/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_8CRX_034 | 1/C/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.4 | |
| HL_8CRX_035 | 1/a/58:67 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_8CRX_109 | 1/a/80:104 | No text annotation | ||
| HL_8CRX_036 | 1/a/86:94 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8CRX_110 | 1/a/122:127 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_8CRX_038 | 1/a/141:148 | GNRA with tandem sheared | homologous HL_4WF9_004 HL_98423.4 | |
| HL_8CRX_039 | 1/a/164:174 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_8CRX_040 | 1/a/201:208 | No text annotation | geometric HL_4WF9_006 HL_48677.2 | |
| HL_8CRX_041 | 1/a/232:237 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_8CRX_042 | 1/a/253:259 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8CRX_045 | 1/a/390:397 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_8CRX_046 | 1/a/404:408 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_8CRX_047 | 1/a/412:420 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8CRX_048 | 1/a/471:481 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8CRX_049 | 1/a/499:506 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_8CRX_050 | 1/a/551:556 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8CRX_051 | 1/a/576:581 | GNRA | homologous HL_4WF9_016 HL_34789.5 | |
| HL_8CRX_052 | 1/a/629:635 | No text annotation | geometric HL_4LFB_004 HL_89167.3 | |
| HL_8CRX_053 | 1/a/649:658 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.4 | |
| HL_8CRX_054 | 1/a/696:702 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_8CRX_055 | 1/a/715:720 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8CRX_056 | 1/a/727:733 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8CRX_057 | 1/a/797:804 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_8CRX_058 | 1/a/829:838 | No text annotation | homologous HL_4WF9_023 HL_50204.2 | |
| HL_8CRX_059 | 1/a/864:870 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_8CRX_060 | 1/a/911:916 | No text annotation | homologous HL_4WF9_025 HL_27530.2 | |
| HL_8CRX_062 | 1/a/1037:1046 | No text annotation | homologous HL_5J7L_159 NA | |
| HL_8CRX_063 | 1/a/1061:1068 | No text annotation | homologous HL_4WF9_028 HL_47171.2 | |
| HL_8CRX_066 | 1/a/1252:1258 | No text annotation | geometric HL_361D_002 NA | |
| HL_8CRX_067 | 1/a/1298:1303 | GNRA | homologous HL_4WF9_031 HL_34789.5 | |
| HL_8CRX_068 | 1/a/1357:1365 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_8CRX_069 | 1/a/1400:1406 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_8CRX_070 | 1/a/1439:1444 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8CRX_071 | 1/a/1465:1474 | No text annotation | homologous HL_4WF9_035 HL_77449.2 | |
| HL_8CRX_072 | 1/a/1631:1642 | No text annotation | ||
| HL_8CRX_073 | 1/a/1672:1678 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8CRX_075 | 1/a/1748:1751 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_8CRX_076 | 1/a/1796:1803 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8CRX_077 | 1/a/1814:1820 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8CRX_078 | 1/a/1875:1880 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8CRX_079 | 1/a/1909:1916 | No text annotation | ||
| HL_8CRX_080 | 1/a/1935:1939 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8CRX_081 | 1/a/1960:1970 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8CRX_082 | 1/a/1989:1994 | GNRA | homologous HL_7RQB_046 NA | |
| HL_8CRX_083 | 1/a/2051:2056 | GNRA | geometric HL_6AZ4_001 HL_34789.5 | |
| HL_8CRX_084 | 1/a/2093:2103 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_8CRX_085 | 1/a/2132:2140 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_8CRX_086 | 1/a/2210:2219 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_8CRX_088 | 1/a/2391:2397 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8CRX_089 | 1/a/2430:2438 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8CRX_090 | 1/a/2446:2458 | No text annotation | homologous HL_4WF9_050 HL_02042.2 | |
| HL_8CRX_115 | 1/a/2486:2494 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8CRX_092 | 1/a/2506:2513 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_8CRX_093 | 1/a/2538:2543 | GNRA | homologous HL_5J7L_190 NA | |
| HL_8CRX_094 | 1/a/2556:2561 | GNRA | homologous HL_5J7L_191 NA | |
| HL_8CRX_095 | 1/a/2586:2595 | tRNA anticodon loop | geometric HL_2AKE_002 HL_11974.3 | |
| HL_8CRX_096 | 1/a/2653:2661 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_8CRX_097 | 1/a/2710:2717 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8CRX_098 | 1/a/2733:2739 | LSU A loop | homologous HL_4WF9_058 HL_48677.2 | |
| HL_8CRX_099 | 1/a/2776:2781 | GNRA | homologous HL_5J7L_196 NA | |
| HL_8CRX_100 | 1/a/2840:2845 | GNRA | geometric HL_4JF2_001 HL_34789.5 | |
| HL_8CRX_101 | 1/a/2883:2888 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_8CRX_102 | 1/a/2927:2941 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_8CRX_103 | 1/a/2976:2983 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_8CRX_104 | 1/a/2999:3007 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8CRX_105 | 1/a/3036:3041 | GNRA | homologous HL_7RQB_069 NA | |
| HL_8CRX_113 | 1/b/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.4 | |
| HL_8CRX_106 | 1/b/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_8CRX_107 | 1/b/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CRX_002 | No text annotation | ||
| HL_8CRX_013 | No text annotation | ||
| HL_8CRX_025 | No text annotation | ||
| HL_8CRX_026 | GNRA | ||
| HL_8CRX_037 | No text annotation | ||
| HL_8CRX_043 | No text annotation | ||
| HL_8CRX_044 | No text annotation | ||
| HL_8CRX_111 | No text annotation | ||
| HL_8CRX_061 | No text annotation | ||
| HL_8CRX_114 | No text annotation | ||
| HL_8CRX_064 | No text annotation | ||
| HL_8CRX_112 | No text annotation | ||
| HL_8CRX_065 | No text annotation | ||
| HL_8CRX_074 | No text annotation | ||
| HL_8CRX_087 | No text annotation | ||
| HL_8CRX_091 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CRX_001 | 1/A/34:36, 1/A/534:535 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8CRX_002 | 1/A/48:49, 1/A/398:400 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8CRX_003 | 1/A/51:56, 1/A/361:363 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8CRX_004 | 1/A/58:60, 1/A/358:359 | Minor groove platform | homologous IL_4LFB_004 IL_34520.4 | |
| IL_8CRX_005 | 1/A/67:70, 1/A/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.4 | |
| IL_8CRX_006 | 1/A/71:73, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_8CRX_007 | 1/A/74:77, 1/A/97:98 | Minor groove platform | geometric IL_5J7L_007 NA | |
| IL_8CRX_008 | 1/A/77:79, 1/A/93:97 | No text annotation | geometric IL_4V84_070 NA | |
| IL_8CRX_009 | 1/A/129:132, 1/A/233:234 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_8CRX_010 | 1/A/133:137, 1/A/229:232 | No text annotation | homologous IL_4LFB_008 IL_60988.3 | |
| IL_8CRX_011 | 1/A/148:154, 1/A/169:176 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8CRX_012 | 1/A/244:249, 1/A/279:286 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.5 | |
| IL_8CRX_013 | 1/A/251:254, 1/A/276:277 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8CRX_014 | 1/A/294:295, 1/A/306:310 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8CRX_015 | 1/A/369:371, 1/A/394:395 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8CRX_016 | 1/A/373:377, 1/A/391:392 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8CRX_017 | 1/A/377:378, 1/A/389:391 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_8CRX_018 | 1/A/411:418, 1/A/429:435 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_8CRX_183 | 1/A/442:443, 1/A/475:479 | No text annotation | ||
| IL_8CRX_020 | 1/A/448:452, 1/A/465:470 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_8CRX_021 | 1/A/452:456, 1/A/461:465 | No text annotation | ||
| IL_8CRX_022 | 1/A/486:493, 1/A/522:523 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8CRX_023 | 1/A/497:503, 1/A/510:518 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8CRX_024 | 1/A/551:557, 1/A/864:865 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8CRX_025 | 1/A/562:566, 1/A/739:743 | tSH-tWH-tHS | homologous IL_4LFB_023 IL_05821.2 | |
| IL_8CRX_026 | 1/A/576:578, 1/A/626:627 | Major groove platform | homologous IL_4LFB_024 IL_48076.9 | |
| IL_8CRX_027 | 1/A/579:580, 1/A/622:625 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.3 | |
| IL_8CRX_028 | 1/A/587:593, 1/A/611:615 | No text annotation | geometric IL_8C3A_433 NA | |
| IL_8CRX_029 | 1/A/636:637, 1/A/733:736 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.3 | |
| IL_8CRX_030 | 1/A/639:641, 1/A/728:731 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_8CRX_031 | 1/A/644:648, 1/A/722:725 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8CRX_184 | 1/A/655:659, 1/A/695:699 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.4 | |
| IL_8CRX_033 | 1/A/666:670, 1/A/681:688 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8CRX_034 | 1/A/756:760, 1/A/786:787 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8CRX_035 | 1/A/761:765, 1/A/781:785 | tSH-tWH-tHS | homologous IL_4LFB_033 IL_05821.2 | |
| IL_8CRX_036 | 1/A/871:878, 1/A/889:894 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8CRX_037 | 1/A/906:907, 1/A/1380:1382 | Single bulged A | homologous IL_4LFB_035 IL_14190.3 | |
| IL_8CRX_038 | 1/A/909:911, 1/A/1377:1378 | Single bulged G | homologous IL_4LFB_036 IL_28408.3 | |
| IL_8CRX_039 | 1/A/917:919, 1/A/1367:1371 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8CRX_040 | 1/A/937:938, 1/A/1212:1214 | Minor groove platform | homologous IL_4LFB_038 IL_34520.4 | |
| IL_8CRX_041 | 1/A/977:981, 1/A/1029:1030 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_8CRX_045 | 1/A/1033:1035, 1/A/1194:1195 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_8CRX_046 | 1/A/1037:1041, 1/A/1190:1192 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.2 | |
| IL_8CRX_047 | 1/A/1042:1043, 1/A/1185:1189 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8CRX_048 | 1/A/1045:1046, 1/A/1181:1183 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_8CRX_049 | 1/A/1046:1048, 1/A/1179:1181 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.5 | |
| IL_8CRX_050 | 1/A/1109:1113, 1/A/1130:1135 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8CRX_053 | 1/A/1233:1239, 1/A/1270:1276 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_8CRX_054 | 1/A/1241:1244, 1/A/1263:1268 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8CRX_056 | 1/A/1289:1294, 1/A/1315:1320 | No text annotation | geometric IL_4LFB_055 IL_57885.3 | |
| IL_8CRX_057 | 1/A/1386:1388, 1/A/1488:1491 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_8CRX_186 | 1/A/1388:1391, 1/A/1484:1488 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_8CRX_187 | 1/A/1392:1394, 1/A/1481:1483 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_8CRX_188 | 1/A/1394:1396, 1/A/1478:1481 | Single bulged A | geometric IL_8UO6_002 IL_53541.1 | |
| IL_8CRX_060 | 1/A/1399:1401, 1/A/1473:1475 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8CRX_061 | 1/A/1403:1406, 1/A/1468:1471 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8CRX_062 | 1/A/1411:1414, 1/A/1460:1463 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8CRX_063 | 1/A/1417:1422, 1/A/1453:1457 | Triple sheared related | geometric IL_4V9F_018 IL_51313.1 | |
| IL_8CRX_064 | 1/A/1422:1424, 1/A/1451:1453 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.5 | |
| IL_8CRX_065 | 1/A/1427:1430, 1/A/1446:1448 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_8CRX_066 | 1/A/1432:1435, 1/A/1442:1444 | No text annotation | geometric IL_5J7L_065 NA | |
| IL_8CRX_067 | 1/a/2:4, 1/a/3078:3080 | No text annotation | ||
| IL_8CRX_068 | 1/a/23:29, 1/a/598:604 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_8CRX_069 | 1/a/35:36, 1/a/531:533 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_8CRX_070 | 1/a/42:43, 1/a/523:525 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8CRX_071 | 1/a/80:86, 1/a/94:104 | No text annotation | ||
| IL_8CRX_072 | 1/a/131:137, 1/a/152:153 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8CRX_073 | 1/a/158:160, 1/a/178:181 | Major groove platform with extra cWW | geometric IL_7A0S_019 IL_36931.3 | |
| IL_8CRX_074 | 1/a/190:191, 1/a/219:221 | Single stack bend | homologous IL_4WF9_007 IL_15011.4 | |
| IL_8CRX_075 | 1/a/195:201, 1/a/208:215 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_8CRX_076 | 1/a/246:252, 1/a/260:265 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8CRX_077 | 1/a/328:329, 1/a/452:455 | Minor groove platform | geometric IL_3RW6_003 IL_24264.2 | |
| IL_8CRX_189 | 1/a/371:380, 1/a/428:440 | No text annotation | ||
| IL_8CRX_078 | 1/a/570:573, 1/a/584:597 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_8CRX_079 | 1/a/624:627, 1/a/637:640 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8CRX_080 | 1/a/647:649, 1/a/658:660 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_8CRX_081 | 1/a/674:676, 1/a/750:751 | Single bulged A | homologous IL_7A0S_012 IL_14190.3 | |
| IL_8CRX_082 | 1/a/690:694, 1/a/704:708 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_8CRX_083 | 1/a/757:759, 1/a/891:893 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.5 | |
| IL_8CRX_084 | 1/a/759:763, 1/a/884:891 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_8CRX_085 | 1/a/782:783, 1/a/848:850 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8CRX_086 | 1/a/787:788, 1/a/813:815 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_8CRX_087 | 1/a/788:792, 1/a/809:813 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_8CRX_088 | 1/a/794:796, 1/a/805:807 | No text annotation | homologous IL_4WF9_025 NA | |
| IL_8CRX_089 | 1/a/823:825, 1/a/842:843 | Major groove platform | homologous IL_4WF9_026 IL_48076.9 | |
| IL_8CRX_090 | 1/a/860:862, 1/a/872:876 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8CRX_091 | 1/a/922:923, 1/a/1023:1025 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_8CRX_092 | 1/a/929:932, 1/a/1016:1017 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.3 | |
| IL_8CRX_190 | 1/a/929:933, 1/a/1014:1017 | No text annotation | ||
| IL_8CRX_093 | 1/a/932:933, 1/a/1014:1016 | No text annotation | ||
| IL_8CRX_094 | 1/a/933:934, 1/a/1012:1014 | Single stack bend | geometric IL_4C7O_002 IL_15011.4 | |
| IL_8CRX_095 | 1/a/941:947, 1/a/999:1005 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_8CRX_096 | 1/a/947:948, 1/a/997:999 | Minor groove platform | geometric IL_4V9F_034 IL_34520.4 | |
| IL_8CRX_097 | 1/a/949:953, 1/a/993:996 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_8CRX_098 | 1/a/955:957, 1/a/989:991 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_8CRX_099 | 1/a/960:964, 1/a/982:986 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_8CRX_196 | 1/a/965:966, 1/a/979:981 | No text annotation | ||
| IL_8CRX_101 | 1/a/1077:1079, 1/a/1243:1244 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8CRX_102 | 1/a/1081:1085, 1/a/1237:1241 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_8CRX_103 | 1/a/1087:1094, 1/a/1234:1235 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_8CRX_104 | 1/a/1094:1096, 1/a/1233:1234 | Single bulged U | homologous IL_4WF9_038 IL_97561.6 | |
| IL_8CRX_105 | 1/a/1101:1107, 1/a/1223:1228 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_8CRX_106 | 1/a/1107:1113, 1/a/1207:1223 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_8CRX_107 | 1/a/1114:1117, 1/a/1204:1206 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_8CRX_108 | 1/a/1126:1135, 1/a/1190:1195 | No text annotation | ||
| IL_8CRX_111 | 1/a/1273:1275, 1/a/1324:1327 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.6 | |
| IL_8CRX_112 | 1/a/1284:1291, 1/a/1311:1315 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_8CRX_113 | 1/a/1295:1296, 1/a/1305:1307 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_8CRX_114 | 1/a/1339:1346, 1/a/2194:2200 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8CRX_115 | 1/a/1386:1389, 1/a/1787:1788 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_8CRX_116 | 1/a/1395:1399, 1/a/1407:1409 | C-loop | homologous IL_7RQB_051 NA | |
| IL_8CRX_117 | 1/a/1427:1431, 1/a/1452:1456 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_8CRX_118 | 1/a/1433:1437, 1/a/1446:1450 | tSH-tWH-tHS | homologous IL_5J7L_293 NA | |
| IL_8CRX_119 | 1/a/1483:1485, 1/a/1777:1779 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.5 | |
| IL_8CRX_120 | 1/a/1486:1489, 1/a/1773:1776 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.3 | |
| IL_8CRX_121 | 1/a/1489:1492, 1/a/1770:1773 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_8CRX_123 | 1/a/1597:1599, 1/a/1762:1765 | Isolated non-canonical cWW pair | geometric IL_4V88_426 NA | |
| IL_8CRX_124 | 1/a/1612:1615, 1/a/1740:1744 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_8CRX_125 | 1/a/1617:1620, 1/a/1734:1738 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8CRX_126 | 1/a/1649:1652, 1/a/1702:1706 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8CRX_127 | 1/a/1655:1659, 1/a/1695:1699 | tSH-tWH-tHS | homologous IL_5J7L_300 NA | |
| IL_8CRX_128 | 1/a/1662:1663, 1/a/1686:1692 | No text annotation | ||
| IL_8CRX_129 | 1/a/1669:1671, 1/a/1679:1680 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8CRX_131 | 1/a/1847:1849, 1/a/2178:2180 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.2 | |
| IL_8CRX_132 | 1/a/1850:1853, 1/a/2176:2177 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_8CRX_192 | 1/a/1850:1858, 1/a/2173:2177 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_8CRX_133 | 1/a/1853:1858, 1/a/2173:2176 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_8CRX_134 | 1/a/1870:1875, 1/a/1880:1886 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8CRX_135 | 1/a/1894:1898, 1/a/1927:1931 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8CRX_136 | 1/a/1902:1909, 1/a/1916:1923 | No text annotation | ||
| IL_8CRX_137 | 1/a/1953:1954, 1/a/2163:2165 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_8CRX_138 | 1/a/1981:1987, 1/a/1996:2004 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_8CRX_139 | 1/a/2020:2023, 1/a/2085:2086 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8CRX_140 | 1/a/2024:2025, 1/a/2081:2084 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8CRX_141 | 1/a/2029:2032, 1/a/2076:2077 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8CRX_142 | 1/a/2034:2038, 1/a/2070:2074 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_8CRX_143 | 1/a/2039:2043, 1/a/2065:2069 | Triple sheared | homologous IL_7A0S_070 IL_15190.3 | |
| IL_8CRX_144 | 1/a/2047:2050, 1/a/2057:2061 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8CRX_145 | 1/a/2116:2117, 1/a/2147:2150 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_8CRX_146 | 1/a/2117:2128, 1/a/2144:2147 | No text annotation | homologous IL_5J7L_319 NA | |
| IL_8CRX_147 | 1/a/2233:2235, 1/a/2799:2800 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_8CRX_148 | 1/a/2237:2239, 1/a/2794:2797 | No text annotation | homologous IL_4WF9_079 IL_80025.2 | |
| IL_8CRX_150 | 1/a/2252:2253, 1/a/2620:2623 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8CRX_151 | 1/a/2263:2265, 1/a/2418:2421 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_8CRX_152 | 1/a/2267:2269, 1/a/2414:2416 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_8CRX_197 | 1/a/2383:2385, 1/a/2403:2404 | No text annotation | geometric IL_8GLP_072 IL_28408.3 | |
| IL_8CRX_154 | 1/a/2479:2481, 1/a/2499:2503 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_8CRX_155 | 1/a/2532:2535, 1/a/2546:2549 | Double sheared | homologous IL_4WF9_087 IL_58355.3 | |
| IL_8CRX_156 | 1/a/2583:2585, 1/a/2596:2597 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_8CRX_193 | 1/a/2636:2637, 1/a/2678:2680 | Major groove platform | homologous IL_4WF9_090 IL_48076.9 | |
| IL_8CRX_194 | 1/a/2639:2641, 1/a/2675:2676 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_8CRX_159 | 1/a/2641:2643, 1/a/2671:2675 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8CRX_160 | 1/a/2643:2645, 1/a/2669:2671 | Isolated non-canonical cWW pair | geometric IL_3BNT_006 NA | |
| IL_8CRX_161 | 1/a/2648:2652, 1/a/2662:2666 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_8CRX_195 | 1/a/2689:2690, 1/a/2762:2764 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_8CRX_163 | 1/a/2692:2694, 1/a/2756:2760 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_8CRX_164 | 1/a/2694:2695, 1/a/2753:2756 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_8CRX_165 | 1/a/2704:2705, 1/a/2722:2725 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_8CRX_167 | 1/a/2773:2774, 1/a/2783:2785 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8CRX_168 | 1/a/2818:2822, 1/a/2956:2964 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_8CRX_169 | 1/a/2834:2840, 1/a/2845:2850 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 NA | |
| IL_8CRX_170 | 1/a/2862:2866, 1/a/2907:2909 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8CRX_172 | 1/a/2877:2878, 1/a/2893:2896 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8CRX_173 | 1/a/2919:2924, 1/a/2944:2949 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_8CRX_174 | 1/a/3018:3019, 1/a/3058:3060 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_8CRX_175 | 1/a/3023:3026, 1/a/3050:3054 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_8CRX_176 | 1/a/3027:3032, 1/a/3045:3049 | tHS double platform | homologous IL_4WF9_108 IL_48489.2 | |
| IL_8CRX_178 | 1/b/17:18, 1/b/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.3 | |
| IL_8CRX_179 | 1/b/23:29, 1/b/55:60 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_8CRX_180 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_8CRX_181 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.13 | |
| IL_8CRX_182 | 1/b/71:79, 1/b/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CRX_019 | No text annotation | ||
| IL_8CRX_032 | No text annotation | ||
| IL_8CRX_185 | No text annotation | ||
| IL_8CRX_042 | Single stack bend | ||
| IL_8CRX_043 | Isolated non-canonical cWW pair | ||
| IL_8CRX_044 | No text annotation | ||
| IL_8CRX_051 | Minor groove platform | ||
| IL_8CRX_052 | No text annotation | ||
| IL_8CRX_055 | Double sheared | ||
| IL_8CRX_058 | No text annotation | ||
| IL_8CRX_059 | Partly complementary | ||
| IL_8CRX_100 | Isolated tHS basepair with bulges | ||
| IL_8CRX_191 | No text annotation | ||
| IL_8CRX_109 | No text annotation | ||
| IL_8CRX_110 | No text annotation | ||
| IL_8CRX_122 | No text annotation | ||
| IL_8CRX_130 | No text annotation | ||
| IL_8CRX_149 | No text annotation | ||
| IL_8CRX_153 | Isolated non-canonical cWW pair | ||
| IL_8CRX_157 | No text annotation | ||
| IL_8CRX_158 | No text annotation | ||
| IL_8CRX_162 | No text annotation | ||
| IL_8CRX_166 | No text annotation | ||
| IL_8CRX_171 | UAA/GAN related, with intercalation | ||
| IL_8CRX_177 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CRX_001 | 1/A/50:51, 1/A/363:369, 1/A/395:397 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_8CRX_027 | 1/A/50:56, 1/A/361:369, 1/A/395:397 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8CRX_002 | 1/A/568:570, 1/A/633:636, 1/A/736:737 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_8CRX_028 | 1/A/568:570, 1/A/633:637, 1/A/733:737 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8CRX_003 | 1/A/654:655, 1/A/699:707, 1/A/714:716 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_8CRX_004 | 1/A/808:811, 1/A/841:845, 1/A/852:858 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8CRX_005 | 1/A/920:923, 1/A/1330:1336, 1/A/1359:1366 | No text annotation | homologous J3_4LFB_002 J3_85722.2 | |
| J3_8CRX_006 | 1/A/927:930, 1/A/1221:1223, 1/A/1323:1326 | No text annotation | homologous J3_4LFB_003 J3_44359.2 | |
| J3_8CRX_007 | 1/A/939:946, 1/A/957:968, 1/A/1207:1211 | No text annotation | homologous J3_4LFB_004 J3_88451.2 | |
| J3_8CRX_008 | 1/A/974:977, 1/A/1030:1032, 1/A/1196:1201 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_8CRX_029 | 1/A/974:981, 1/A/1029:1032, 1/A/1196:1201 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8CRX_009 | 1/A/1048:1053, 1/A/1092:1098, 1/A/1173:1179 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_8CRX_030 | 1/A/1058:1059, 1/A/1068:1071, 1/A/1084:1087 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8CRX_011 | 1/A/1101:1103, 1/A/1141:1144, 1/A/1167:1170 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8CRX_031 | 1/A/1101:1103, 1/A/1141:1147, 1/A/1161:1170 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8CRX_012 | 1/A/1223:1227, 1/A/1282:1289, 1/A/1320:1323 | No text annotation | homologous J3_4LFB_009 J3_03192.2 | |
| J3_8CRX_013 | 1/a/29:30, 1/a/563:570, 1/a/597:598 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_8CRX_032 | 1/a/29:30, 1/a/563:573, 1/a/584:598 | No text annotation | homologous J3_9DFE_002 J3_17917.2 | |
| J3_8CRX_033 | 1/a/31:34, 1/a/534:550, 1/a/557:562 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_8CRX_014 | 1/a/55:56, 1/a/69:75, 1/a/109:113 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_8CRX_015 | 1/a/323:325, 1/a/458:464, 1/a/488:493 | No text annotation | ||
| J3_8CRX_034 | 1/a/333:341, 1/a/350:370, 1/a/441:448 | No text annotation | ||
| J3_8CRX_035 | 1/a/382:386, 1/a/401:410, 1/a/422:426 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_8CRX_016 | 1/a/768:774, 1/a/858:860, 1/a/876:879 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8CRX_017 | 1/a/783:785, 1/a/817:821, 1/a/845:848 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8CRX_019 | 1/a/1374:1379, 1/a/1809:1811, 1/a/1823:1826 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_8CRX_020 | 1/a/1382:1385, 1/a/1789:1795, 1/a/1804:1806 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_8CRX_021 | 1/a/1420:1426, 1/a/1457:1461, 1/a/1478:1479 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_8CRX_037 | 1/a/1604:1609, 1/a/1747:1748, 1/a/1751:1757 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_8CRX_022 | 1/a/2273:2275, 1/a/2378:2382, 1/a/2405:2410 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_8CRX_038 | 1/a/2464:2466, 1/a/2566:2577, 1/a/2603:2609 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8CRX_023 | 1/a/2477:2479, 1/a/2503:2505, 1/a/2514:2519 | No text annotation | homologous J3_4WF9_008 J3_05327.2 | |
| J3_8CRX_024 | 1/a/2699:2702, 1/a/2727:2729, 1/a/2743:2749 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_8CRX_025 | 1/a/2994:2995, 1/a/3011:3016, 1/a/3062:3066 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_8CRX_026 | 1/b/11:16, 1/b/68:70, 1/b/107:110 | No text annotation | ||
| J4_8CRX_001 | 1/A/115:123, 1/A/240:242, 1/A/288:291, 1/A/313:314 | No text annotation | ||
| J4_8CRX_002 | 1/A/143:145, 1/A/179:185, 1/A/208:214, 1/A/221:223 | No text annotation | ||
| J4_8CRX_003 | 1/A/557:559, 1/A/746:751, 1/A/792:803, 1/A/863:864 | No text annotation | homologous J4_4LFB_003 J4_14595.2 | |
| J4_8CRX_004 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | tRNA junction | homologous J4_9DFC_015 NA | |
| J4_8CRX_005 | 1/a/275:280, 1/a/318:323, 1/a/493:495, 1/a/510:513 | No text annotation | ||
| J4_8CRX_006 | 1/a/382:386, 1/a/401:404, 1/a/408:410, 1/a/422:426 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_8CRX_007 | 1/a/685:688, 1/a/710:714, 1/a/721:724, 1/a/736:741 | No text annotation | ||
| J4_8CRX_008 | 1/a/1347:1352, 1/a/1370:1371, 1/a/1829:1832, 1/a/2192:2193 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_8CRX_009 | 1/a/1386:1390, 1/a/1414:1419, 1/a/1480:1481, 1/a/1781:1788 | No text annotation | homologous J4_9DFE_004 J4_77353.2 | |
| J4_8CRX_010 | 1/a/1389:1390, 1/a/1414:1419, 1/a/1480:1481, 1/a/1781:1787 | No text annotation | homologous J4_4WF9_006 J4_48150.2 | |
| J4_8CRX_011 | 1/a/1624:1626, 1/a/1647:1648, 1/a/1707:1712, 1/a/1724:1730 | No text annotation | ||
| J4_8CRX_012 | 1/a/1955:1959, 1/a/1971:1975, 1/a/2010:2013, 1/a/2158:2162 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8CRX_013 | 1/a/2016:2018, 1/a/2088:2089, 1/a/2107:2116, 1/a/2150:2155 | No text annotation | homologous J4_9DFE_008 J4_42306.2 | |
| J4_8CRX_014 | 1/a/2467:2471, 1/a/2525:2529, 1/a/2552:2554, 1/a/2563:2565 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_8CRX_015 | 1/a/2825:2828, 1/a/2856:2858, 1/a/2913:2917, 1/a/2951:2953 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_8CRX_001 | 1/A/40:43, 1/A/405:408, 1/A/438:442, 1/A/479:482, 1/A/527:530 | No text annotation | ||
| J5_8CRX_002 | 1/A/40:43, 1/A/405:408, 1/A/438:443, 1/A/475:482, 1/A/527:530 | No text annotation | ||
| J5_8CRX_003 | 1/A/62:65, 1/A/106:113, 1/A/316:318, 1/A/339:341, 1/A/352:356 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_8CRX_004 | 1/a/46:53, 1/a/115:120, 1/a/129:131, 1/a/153:156, 1/a/183:185 | No text annotation | ||
| J5_8CRX_005 | 1/a/275:280, 1/a/318:325, 1/a/458:464, 1/a/488:495, 1/a/510:513 | No text annotation | ||
| J5_8CRX_006 | 1/a/619:621, 1/a/643:647, 1/a/660:662, 1/a/1338:1339, 1/a/2200:2201 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_8CRX_007 | 1/a/667:672, 1/a/753:756, 1/a/894:897, 1/a/1272:1273, 1/a/1327:1333 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_8CRX_008 | 1/a/1858:1866, 1/a/1890:1892, 1/a/1933:1935, 1/a/1939:1947, 1/a/2171:2173 | No text annotation | ||
| J5_8CRX_009 | 1/a/2240:2247, 1/a/2628:2636, 1/a/2680:2689, 1/a/2764:2770, 1/a/2788:2793 | No text annotation | ||
| J5_8CRX_010 | 1/a/2256:2259, 1/a/2425:2428, 1/a/2440:2441, 1/a/2463:2464, 1/a/2609:2617 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_8CRX_001 | 1/a/44:45, 1/a/186:190, 1/a/221:231, 1/a/238:242, 1/a/269:273, 1/a/515:522 | No text annotation | ||
| J6_8CRX_002 | 1/a/2256:2259, 1/a/2425:2428, 1/a/2440:2441, 1/a/2463:2466, 1/a/2566:2577, 1/a/2603:2617 | No text annotation | ||
| J7_8CRX_001 | 1/a/902:907, 1/a/920:921, 1/a/1026:1029, 1/a/1054:1059, 1/a/1070:1074, 1/a/1247:1248, 1/a/1262:1267 | No text annotation | ||
| J8_8CRX_001 | 1/a/6:14, 1/a/613:619, 1/a/2201:2206, 1/a/2223:2226, 1/a/2807:2812, 1/a/2970:2973, 1/a/2986:2991, 1/a/3069:3076 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8CRX_010 | No text annotation | ||
| J3_8CRX_018 | No text annotation | ||
| J3_8CRX_039 | No text annotation | ||
| J3_8CRX_036 | No text annotation |
Coloring options: