HL_8CSP_004

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSP_004 not in the Motif Atlas

Geometric match to HL_4Y1M_003

Geometric discrepancy: 0.1008

The information below is about HL_4Y1M_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8CSP|1|A|A|768
8CSP|1|A|G|769
8CSP|1|A|C|770
8CSP|1|A|A|771
8CSP|1|A|A|772
8CSP|1|A|U|773

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain N

28S ribosomal protein S17, mitochondrial