8CSP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CSP_001 | 1/A/654:664 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_8CSP_002 | 1/A/701:708 | No text annotation | ||
| HL_8CSP_003 | 1/A/734:740 | GNRA | geometric HL_3NVI_002 NA | |
| HL_8CSP_004 | 1/A/768:773 | GNRA | geometric HL_4Y1M_003 HL_34789.1 | |
| HL_8CSP_005 | 1/A/792:796 | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
| HL_8CSP_006 | 1/A/804:809 | No text annotation | ||
| HL_8CSP_007 | 1/A/842:847 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_8CSP_008 | 1/A/894:899 | GNRA | geometric HL_1G1X_003 NA | |
| HL_8CSP_010 | 1/A/1023:1028 | GNRA | geometric HL_1G1X_005 NA | |
| HL_8CSP_011 | 1/A/1074:1084 | No text annotation | ||
| HL_8CSP_012 | 1/A/1115:1126 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_8CSP_013 | 1/A/1150:1155 | No text annotation | ||
| HL_8CSP_014 | 1/A/1218:1235 | No text annotation | ||
| HL_8CSP_015 | 1/A/1281:1287 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_8CSP_016 | 1/A/1373:1379 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_8CSP_019 | 1/A/1580:1585 | GNRA | homologous HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CSP_009 | No text annotation | ||
| HL_8CSP_017 | No text annotation | ||
| HL_8CSP_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CSP_001 | 1/A/649:651, 1/A/667:668 | No text annotation | ||
| IL_8CSP_002 | 1/A/674:676, 1/A/921:923 | No text annotation | geometric IL_1NBS_006 NA | |
| IL_8CSP_003 | 1/A/685:686, 1/A/859:861 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8CSP_004 | 1/A/690:692, 1/A/822:823 | Single bulged A | geometric IL_4R4V_004 IL_14190.1 | |
| IL_8CSP_005 | 1/A/694:696, 1/A/819:820 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8CSP_006 | 1/A/727:729, 1/A/744:747 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8CSP_007 | 1/A/729:732, 1/A/742:744 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8CSP_008 | 1/A/756:761, 1/A/779:786 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.4 | |
| IL_8CSP_009 | 1/A/762:765, 1/A/777:778 | Major groove platform; stack outside cWW | geometric IL_3DIL_004 IL_74641.1 | |
| IL_8CSP_032 | 1/A/762:766, 1/A/775:778 | No text annotation | ||
| IL_8CSP_010 | 1/A/765:766, 1/A/775:777 | No text annotation | ||
| IL_8CSP_011 | 1/A/830:832, 1/A/855:856 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_8CSP_012 | 1/A/834:838, 1/A/852:853 | C-loop | homologous IL_5J7L_018 NA | |
| IL_8CSP_013 | 1/A/838:839, 1/A/850:852 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_8CSP_014 | 1/A/876:885, 1/A/910:913 | No text annotation | ||
| IL_8CSP_015 | 1/A/887:893, 1/A/900:908 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8CSP_016 | 1/A/935:941, 1/A/1133:1134 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8CSP_017 | 1/A/946:950, 1/A/1044:1049 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_8CSP_018 | 1/A/1020:1022, 1/A/1029:1030 | Other IL | geometric IL_3WBM_004 NA | |
| IL_8CSP_019 | 1/A/1062:1066, 1/A/1092:1093 | Left turn | homologous IL_5J7L_036 NA | |
| IL_8CSP_020 | 1/A/1067:1071, 1/A/1087:1091 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_8CSP_021 | 1/A/1109:1111, 1/A/1130:1132 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_8CSP_022 | 1/A/1139:1147, 1/A/1158:1164 | No text annotation | ||
| IL_8CSP_023 | 1/A/1185:1190, 1/A/1464:1469 | No text annotation | ||
| IL_8CSP_034 | 1/A/1206:1207, 1/A/1357:1359 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8CSP_024 | 1/A/1207:1208, 1/A/1356:1358 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_8CSP_025 | 1/A/1244:1252, 1/A/1340:1345 | No text annotation | ||
| IL_8CSP_026 | 1/A/1253:1255, 1/A/1338:1339 | No text annotation | ||
| IL_8CSP_027 | 1/A/1257:1260, 1/A/1335:1336 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_8CSP_028 | 1/A/1262:1263, 1/A/1329:1333 | Multiple bulged bases | geometric IL_4YAZ_007 IL_71421.1 | |
| IL_8CSP_029 | 1/A/1265:1266, 1/A/1325:1327 | Single bulged A | geometric IL_7A0S_012 IL_14190.1 | |
| IL_8CSP_030 | 1/A/1266:1268, 1/A/1323:1325 | Isolated non-canonical cWW pair | geometric IL_2O3Y_001 IL_71625.1 | |
| IL_8CSP_031 | 1/A/1278:1279, 1/A/1289:1297 | No text annotation | geometric IL_8S95_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CSP_033 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CSP_001 | 1/A/677:680, 1/A/866:872, 1/A/917:920 | No text annotation | ||
| J3_8CSP_002 | 1/A/687:690, 1/A/823:830, 1/A/856:858 | No text annotation | ||
| J3_8CSP_003 | 1/A/973:974, 1/A/1014:1020, 1/A/1030:1031 | No text annotation | ||
| J3_8CSP_005 | 1/A/1192:1194, 1/A/1428:1434, 1/A/1456:1462 | No text annotation | ||
| J3_8CSP_004 | 1/A/1210:1217, 1/A/1236:1238, 1/A/1351:1354 | No text annotation | ||
| J4_8CSP_001 | 1/A/698:701, 1/A/708:715, 1/A/800:802, 1/A/811:817 | No text annotation | ||
| J4_8CSP_002 | 1/A/717:724, 1/A/750:753, 1/A/789:791, 1/A/797:798 | No text annotation |
Problematic loops
No problematic loops
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