HL_8CSP_015

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

8CSP|1|A|A|1283, 8CSP|1|A|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSP_015 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2934

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8CSP|1|A|U|1281
8CSP|1|A|G|1282
8CSP|1|A|A|1283
8CSP|1|A|U|1284
8CSP|1|A|G|1285
8CSP|1|A|A|1286
8CSP|1|A|A|1287

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain B

28S ribosomal protein S2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial