HL_8CSQ_012
3D structure
- PDB id
- 8CSQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- UAAAUCAACAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CSQ_012 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2095
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
8CSQ|1|A|U|1115
8CSQ|1|A|A|1116
8CSQ|1|A|A|1117
8CSQ|1|A|A|1118
8CSQ|1|A|U|1119
8CSQ|1|A|C|1120
8CSQ|1|A|A|1121
8CSQ|1|A|A|1122
8CSQ|1|A|C|1123
8CSQ|1|A|A|1124
8CSQ|1|A|A|1125
8CSQ|1|A|A|1126
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain S
- 28S ribosomal protein S23, mitochondrial
Coloring options: