HL_8CSQ_013

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8CSQ|1|A|C|1153, 8CSQ|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSQ_013 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2036

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CSQ|1|A|C|1150
8CSQ|1|A|C|1151
8CSQ|1|A|A|1152
8CSQ|1|A|C|1153
8CSQ|1|A|A|1154
8CSQ|1|A|G|1155

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 5

Dimethyladenosine transferase 1, mitochondrial

Chain L

28S ribosomal protein S15, mitochondrial