HL_8CSR_003

3D structure

PDB id

8CSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

8CSR|1|A|C|736, 8CSR|1|A|C|737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSR_003 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.244

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8CSR|1|A|C|734
8CSR|1|A|A|735
8CSR|1|A|C|736
8CSR|1|A|C|737
8CSR|1|A|A|738
8CSR|1|A|C|739
8CSR|1|A|G|740

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial