HL_8CST_009
3D structure
- PDB id
- 8CST (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UUGUAAAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CST_009 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.2233
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8CST|1|A|U|989
8CST|1|A|U|990
8CST|1|A|G|991
8CST|1|A|U|992
8CST|1|A|A|993
8CST|1|A|A|994
8CST|1|A|A|995
8CST|1|A|A|996
8CST|1|A|A|997
8CST|1|A|A|998
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 6
- Putative ribosome-binding factor A, mitochondrial
- Chain I
- 28S ribosomal protein S11, mitochondrial
- Chain Q
- 28S ribosomal protein S21, mitochondrial
Coloring options: