HL_8CST_012
3D structure
- PDB id
- 8CST (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UAAAUCAACAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CST_012 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.2992
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8CST|1|A|U|1115
8CST|1|A|A|1116
8CST|1|A|A|1117
8CST|1|A|A|1118
8CST|1|A|U|1119
8CST|1|A|C|1120
8CST|1|A|A|1121
8CST|1|A|A|1122
8CST|1|A|C|1123
8CST|1|A|A|1124
8CST|1|A|A|1125
8CST|1|A|A|1126
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 6
- Putative ribosome-binding factor A, mitochondrial
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain S
- 28S ribosomal protein S23, mitochondrial
Coloring options: